Name: Bradyrhizobium japonicum JCM 10346
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 160911

Type strain:

Species: Bradyrhizobium japonicum

Culture col. no.: JCM 10346

Strain history: K. Minamisawa NK6.

NCBI tax ID(s): 375 (species)

SI-ID 111463

JCM 10346

Special Collections

Other strains from Bradyrhizobium japonicum

Section

Bradyrhizobium japonicum JCM 10346 is a bacterium that was isolated from Nodule of Glycine max cultivated in soil collected in Nagakura field at Niigata Agricultural Experiment Station.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Nitrobacteraceae*
	Genus	*Bradyrhizobium*
	Species	**Bradyrhizobium japonicum**
	Full Scientific Name (LPSN)	Bradyrhizobium japonicum (Kirchner 1896) Jordan 1982

	Synonym	"Rhizobacterium* japonicum"*
	Synonym	Rhizobium japonicum

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Nodule of Glycine max cultivated in soil collected in Nagakura field at Niigata Agricultural Experiment Station
[Ref.: #67770]	Host species	Glycine max
[Ref.: #67770]	Geographic location (country and/or sea, region)	Niigata Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB070569 (>99% sequence identity) for Bradyrhizobium from Microbeatlas

Aquatic Samples	2827
Soil Samples	5001
Animal Samples	4320
Plant Samples	739
Total Samples	12887

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bradyrhizobium japonicum gene for 16S rRNA, partial sequence, strain:NK6	AB004808	983	GenBank ENA	375 tax ID
[Ref.: #67770]	Bradyrhizobium japonicum gene for 16S ribosomal RNA, partial sequence, strain:NK6	AB070569	1428	GenBank ENA	375 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bradyrhizobium diazoefficiens NK6	GCA_001549695	complete	GenBank ENA	1355477 tax ID

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 10346

[Ref.: #113086]

SI-ID 111463

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#113086

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID111463.1 )

* These data were automatically processed and therefore are not curated

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