Bradyrhizobium japonicum (JCM 10346)

Name: Bradyrhizobium japonicum (JCM 10346)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160911

Type strain

Culture col. no. JCM 10346

NCBI tax ID(s) 375

Special Collections JCM

History K. Minamisawa NK6.

Links

Bradyrhizobium japonicum JCM 10346 is a bacterium that was isolated from Nodule of Glycine max cultivated in soil collected in Nagakura field at Niigata Agricultural Experiment Station.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 111463

JCM 10346

@ref 20215

Last LPSN update 2026-02-09 11:39:00

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Nitrobacteraceae

Genus Bradyrhizobium

Species Bradyrhizobium japonicum

Full scientific name Bradyrhizobium japonicum (Kirchner 1896) Jordan 1982

Synonyms (2)

"Rhizobacterium japonicum"
Rhizobium japonicum

BacDive ID	Other strains from **Bradyrhizobium japonicum** (13)	Type strain
1805	B. japonicum 3I1b6, DSM 30131, ATCC 10324, CCUG 27876, ... (type strain)
1802	B. japonicum DSM 1755, DES 122
1803	B. japonicum SR, DSM 1756
1804	B. japonicum DSM 1982, TAL 379
13606	B. japonicum 3C231, DSM 30140, ATCC 10319, JCM 20681, ...
160909	B. japonicum JCM 10344
160910	B. japonicum JCM 10345
160912	B. japonicum JCM 10347
160913	B. japonicum JCM 10348
160914	B. japonicum JCM 10349
160916	B. japonicum JCM 10350
161077	B. japonicum JCM 10834, USDA 123
162895	B. japonicum JCM 20362, IAM 12034

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
67770	Nodule of Glycine max cultivated in soil collected in Nagakura field at Niigata Agricultural Experiment Station	Glycine max	Niigata Pref.	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB070569 (>99% sequence identity) for Bradyrhizobium from Microbeatlas

Aquatic Samples	2827
Soil Samples	5001
Animal Samples	4320
Plant Samples	739
Total Samples	12887

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
67770	ASM154969v1 assembly for Bradyrhizobium diazoefficiens NK6	complete	GCA_001549695	2687453119	1355477	70.31

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Bradyrhizobium japonicum gene for 16S rRNA, partial sequence, strain:NK6	AB004808	983		375
67770	Bradyrhizobium japonicum gene for 16S ribosomal RNA, partial sequence, strain:NK6	AB070569	1428		375

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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