Nitratiruptor labii (JCM 34002, DSM 111345, HRV44)

Name: Nitratiruptor labii (JCM 34002, DSM 111345, HRV44)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160832

Type strain

Strain Designation HRV44

Culture col. no. JCM 34002 DSM 111345 HRV44

NCBI tax ID(s) 2706014

Special Collections DSMZ JCM

Links

Nitratiruptor labii HRV44 is a thermophilic prokaryote that was isolated from deep-sea hydrothermal vent.

thermophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 404818

JCM 34002,DSM 111345

@ref 20215

Last LPSN update 2025-12-16 10:08:35

Domain Pseudomonadati

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order [Epsilonproteobacteria, not assigned to order]

Family Nitratiruptoraceae

Genus Nitratiruptor

Species Nitratiruptor labii

Full scientific name Nitratiruptor labii Fukushi et al. 2021

Synonyms (1)

Nitrosophilus labii

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67769	MMJHS MEDIUM (DSMZ Medium 1721)		Medium recipe at MediaDive	Name: MMJHS MEDIUM (DSMZ Medium 1721) Composition: Sulfur 10.0 g/l MgCl2 x 6 H2O 4.2 g/l Na2S2O3 x 5 H2O 1.0 g/l NaHCO3 1.0 g/l NaNO3 1.0 g/l KCl 0.5 g/l NH4Cl 0.25 g/l K2HPO4 0.14 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l NaCl 0.01 g/l MnSO4 x n H2O 0.005 g/l ZnSO4 x 7 H2O 0.0018 g/l CoSO4 x 7 H2O 0.0018 g/l Na2WO4 x 2 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Na2SeO3 x 5 H2O 0.0005 g/l NiCl2 x 6 H2O 0.00025 g/l H3BO3 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l CuSO4 x 5 H2O 0.0001 g/l AlK(SO4)2 2e-05 g/l Distilled water
67769	NITRATIRUPTOR AND NITRATIFACTOR MEDIUM (DSMZ Medium 1024)		Medium recipe at MediaDive	Name: NITRATIRUPTOR AND NITRATIFRACTOR MEDIUM (DSMZ Medium 1024) Composition: MgCl2 x 6 H2O 418.0 g/l KCl 33.0 g/l NH4Cl 25.0 g/l K2HPO4 14.0 g/l Sulfur powder 3.0 g/l MgSO4 x 7 H2O 3.0 g/l C6H9NO6 1.5 g/l Fe(NH4)2(SO4)2 x 6 H2O 1.0 g/l NaCl 1.0 g/l Na2S2O3 x 5 H2O 1.0 g/l NaHCO3 1.0 g/l NaNO3 1.0 g/l MnSO4 x 2 H2O 0.5 g/l CoSO4 x 7 H2O 0.18 g/l ZnSO4 x 7 H2O 0.18 g/l FeSO4 x 7 H2O 0.1 g/l CaCl2 x 2 H2O 0.1 g/l NiCl2 x 6 H2O 0.025 g/l AlK(SO4)2 x 12 H2O 0.02 g/l Nitrilotriacetic acid 0.015 g/l Na2MoO4 x 2 H2O 0.01 g/l CuSO4 x 5 H2O 0.01 g/l H3BO3 0.01 g/l MnSO4 x H2O 0.005 g/l Na2SeO3 x 5 H2O 0.0003 g/l Pyridoxine hydrochloride 0.0001 g/l Calcium D-(+)-pantothenate 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Thiamine HCl 5e-05 g/l (DL)-alpha-Lipoic acid 5e-05 g/l Riboflavin 5e-05 g/l Nicotinic acid 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Na2WO4 x 2 H2O 4e-06 g/l Vitamin B12 1e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67769	positive	growth	55	thermophilic
67770	positive	growth	55	thermophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
67769	deep-sea hydrothermal vent	Mid-Okinawa Trough	Japan	JPN	Asia	27.9128	127.106 27.9128/127.106
67770	Deep-sea hydrothermal flange structure at the Iheya North hydrothermal field in the Mid-Okinawa Trough		Japan	JPN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1446698v1 assembly for Nitrosophilus labii HRV44	complete	GCA_014466985	2706014.3	2989009520	2706014	95.58

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Nitrosophilus labii HRV44 gene for 16S ribosomal RNA, partial sequence	LC528620	1757		2706014

GC content

@ref	GC-content (mol%)	Method
67769	33.4	sequence analysis
67770	33.4	genome sequence analysis

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nitrosophilus alvini gen. nov., sp. nov., a hydrogen-oxidizing chemolithoautotroph isolated from a deep-sea hydrothermal vent in the East Pacific Rise, inferred by a genome-based taxonomy of the phylum "Campylobacterota".	Shiotani T, Mino S, Sato W, Nishikawa S, Yonezawa M, Sievert SM, Sawabe T	PLoS One	10.1371/journal.pone.0241366	2020
Phylogeny	Biogeochemical Implications of N2O-Reducing Thermophilic Campylobacteria in Deep-Sea Vent Fields, and the Description of Nitratiruptor labii sp. nov.	Fukushi M, Mino S, Tanaka H, Nakagawa S, Takai K, Sawabe T	iScience	10.1016/j.isci.2020.101462	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67769	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111345
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nitratiruptor labii (JCM 34002, DSM 111345, HRV44)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014466985

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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