Name: Nitratiruptor labii HRV44
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 160832

Type strain:

Species: Nitratiruptor labii

Strain Designation: HRV44

Culture col. no.: DSM 111345, JCM 34002

Strain history: S. Mino; Hokkaido Univ., Japan; HRV44.

NCBI tax ID(s): 2706014 (species)

Special Collections

DSMZ
JCM

Section

Nitratiruptor labii HRV44 is a bacterium that was isolated from deep-sea hydrothermal vent.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	[Epsilonproteobacteria, not assigned to order]
	Family	*Nitratiruptoraceae*
	Genus	*Nitratiruptor*
	Species	**Nitratiruptor labii**
	Full Scientific Name (LPSN)	Nitratiruptor labii Fukushi et al. 2021

Synonym

Nitrosophilus labii

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67769]

Culture medium

MMJHS MEDIUM (DSMZ Medium 1721)

[Ref.: #67769]

Culture medium growth

[Ref.: #67769]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67769]

Culture medium composition

expand / minimize

[Ref.: #67769]

Culture medium

NITRATIRUPTOR AND NITRATIFACTOR MEDIUM (DSMZ Medium 1024)

[Ref.: #67769]

Culture medium growth

[Ref.: #67769]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67769]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67769]			growth	55 °C
[Ref.: #67770]			growth	55 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67769]	Sample type/isolated from	deep-sea hydrothermal vent
[Ref.: #67769]	Geographic location (country and/or sea, region)	Mid-Okinawa Trough
[Ref.: #67769]	Country	Japan
[Ref.: #67769]	Country ISO 3 Code	JPN
[Ref.: #67769]	Continent	Asia
[Ref.: #67769]	Geographic location	27.9128°/127.1060°

[Ref.: #67770]	Sample type/isolated from	Deep-sea hydrothermal flange structure at the Iheya North hydrothermal field in the Mid-Okinawa Trough
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nitrosophilus labii HRV44 gene for 16S ribosomal RNA, partial sequence	LC528620	1757	GenBank ENA	2706014 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nitrosophilus labii HRV44	GCA_014466985	complete	GenBank ENA	2706014 tax ID

[Ref.: #67769]	GC-content	33.4 mol%	sequence analysis
[Ref.: #67770]	GC-content	33.4 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #67769]

Culture collection no.

DSM 111345, JCM 34002

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nitrosophilus alvini gen. nov., sp. nov., a hydrogen-oxidizing chemolithoautotroph isolated from a deep-sea hydrothermal vent in the East Pacific Rise, inferred by a genome-based taxonomy of the phylum "Campylobacterota".	Shiotani T, Mino S, Sato W, Nishikawa S, Yonezawa M, Sievert SM, Sawabe T	PLoS One	10.1371/journal.pone.0241366	2020	*
Phylogeny	Biogeochemical Implications of N2O-Reducing Thermophilic Campylobacteria in Deep-Sea Vent Fields, and the Description of Nitratiruptor labii sp. nov.	Fukushi M, Mino S, Tanaka H, Nakagawa S, Takai K, Sawabe T	iScience	10.1016/j.isci.2020.101462	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67769

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111345

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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