Blastopirellula retiformator Enrichment 8 is an other bacterium that was isolated from marine biotic surface in the seawater close to the shallow-sea hydrothermal vent system off Panarea Island .
other genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Planctomycetota |
| Class Planctomycetia |
| Order Pirellulales |
| Family Pirellulaceae |
| Genus Blastopirellula |
| Species Blastopirellula retiformator |
| Full scientific name Blastopirellula retiformator Kallscheuer et al. 2021 |
| @ref: | 67767 |
| multimedia content: | DSM_100415.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_100415.jpg |
| caption: | Micrograph of Blastopirllula retiformator DSM100415(T). Scale bar represents 2µm. |
| intellectual property rights: | Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 67767 | PLANCTOMYCES MEDIUM (DSMZ Medium 1560) | Medium recipe at MediaDive | Name: MARINES PLANCTOMYCES MEDIUM (DSMZ Medium 1560) Composition: Agar 15.0 g/l NaCl 11.735 g/l MgCl2 x 6 H2O 5.32 g/l HEPES 2.38 g/l Na2SO4 1.96 g/l N-Acetylglucosamine 0.8 g/l CaCl2 0.715 g/l MgSO4 x 7 H2O 0.594 g/l KCl 0.345 g/l Glucose 0.25 g/l Peptone 0.25 g/l Yeast extract 0.25 g/l Nitrilotriacetic acid 0.2 g/l NaHCO3 0.095 g/l CaCl2 x 2 H2O 0.0668 g/l KBr 0.048 g/l SrCl2 0.02 g/l H3BO3 0.013 g/l Na-Nitrilotriacetat 0.0015 g/l NaF 0.0015 g/l ZnSO4 x 7 H2O 0.001095 g/l FeSO4 x 7 H2O 0.0005 g/l MnSO4 x H2O 0.0005 g/l Na2MoO7O4 x 2 H2O 0.0002534 g/l Na-EDTA 0.00025 g/l Pyridoxine hydrochloride 0.0001 g/l Fe SO4 x 7 H2O 0.0001 g/l Co(NO3)2 x 6 H2O 0.0001 g/l ZnCl2 0.0001 g/l D-Calcium pantothenate 5e-05 g/l Nicotinamide 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavine 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l NiCl2 x 6 H2O 5e-05 g/l H2SeO3 5e-05 g/l Biotin 2e-05 g/l Folic acid 2e-05 g/l Na2B4O7 x 10 H2O 1.77e-05 g/l CuSO4 x 5 H2O 1e-05 g/l AlK(SO4)2 x 12 H2O 1e-05 g/l Na2MoO4 x 2 H2O 1e-05 g/l Na2WO4 x 2 H2O 1e-05 g/l Vitamin B12 1e-06 g/l Double distilled water Distilled water |
| @ref | Sample type | Sampling date | Geographic location | Country | Country ISO 3 Code | Continent | Latitude | Longitude | |
|---|---|---|---|---|---|---|---|---|---|
| 67767 | marine biotic surface in the seawater close to the shallow-sea hydrothermal vent system off Panarea Island (09_10_P21_09) | hydrothermal vent system off Panarea Island | Italy | ITA | Europe | 38.6387 | 15.1068 38.6387/15.1068 | ||
| 68093 | hydrothermal area, marine biotic surface | 2013-09-10 | Tyrrhenian Sea, Panarea Island | Italy | ITA | Europe | 38.6387 | 15.1068 38.6387/15.1068 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 68093 | ASM785975v1 assembly for Blastopirellula retiformator Enr8 | scaffold | 2527970 | 74.14 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 67767 | Blastopirellula retiformator 16S ribosomal RNA gene, partial sequence | MK554541 | 1508 | 2527970 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 68093 | 59.2 | genome sequence analysis |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Blastopirellula retiformator sp. nov. isolated from the shallow-sea hydrothermal vent system close to Panarea Island. | Kallscheuer N, Wiegand S, Heuer A, Rensink S, Boersma AS, Jogler M, Boedeker C, Peeters SH, Rast P, Jetten MSM, Rohde M, Jogler C | Antonie Van Leeuwenhoek | 10.1007/s10482-019-01377-2 | 2020 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #67767 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100415 |
| #68093 | Nicolai Kallscheuer, Sandra Wiegand, Anja Heuer, Stephanie Rensink, Alje S. Boersma, Mareike Jogler, Christian Boedeker, Stijn H. Peeters, Patrick Rast, Mike S. M. Jetten, Manfred Rohde, Christian Jogler: Blastopirellula retiformator sp. nov. isolated from the shallow-sea hydrothermal vent system close to Panarea Island. Antonie Van Leeuwenhoek 113: 1811 - 1822 2020 ( DOI 10.1007/s10482-019-01377-2 ) |
| #68160 | Xiao-Han Guo, Ning Wang, Xiao-Xue Yuan, Xi-Ying Zhang, Xiu-Lan Chen, Yu-Zhong Zhang and Xiao-Yan Song: Poseidonibacter antarcticus sp. nov., isolated from Antarctic intertidal sediment. IJSEM 69: 2717 - 2722 2019 ( DOI 10.1099/ijsem.0.003539 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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