Name: Microbispora fusca NEAU-HEGS1-5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160812

Type strain:

Species: Microbispora fusca

Strain Designation: NEAU-HEGS1-5

Culture col. no.: DSM 104648, CCTCC AA 2019030

Strain history: <- J. Zhao; School of Life Science, Northeast Agricultural University, Harbin, P.R. CHINA; NEAU-HEGS1-5<-C. Han

NCBI tax ID(s): 2576905 (species)

SI-ID 407154

DSM 104648

Section

Microbispora fusca NEAU-HEGS1-5 is an aerobe, spore-forming, mesophilic bacterium that builds a branched non-fragmented substrate mycelium with aerial hyphae and was isolated from Ear of wheat.

spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Microbispora*
	Species	**Microbispora fusca**
	Full Scientific Name (LPSN)	Microbispora fusca Zhao et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69498]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69498]	Cell length	0.96-1.54 µm

[Ref.: #69498]	Cell width	0.92-1.43 µm

[Ref.: #69498]	Cell shape	spore-shaped

[Ref.: #69498]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.621

[Ref.: #69278]	Colony color	Fawn brown (8007)
[Ref.: #69278]	Cultivation medium used	ISP 2

[Ref.: #69278]	Colony color	Brown beige (1011), sepia brown (8014)
[Ref.: #69278]	Cultivation medium used	ISP 3

[Ref.: #69278]	Colony color	Oyster white (1013)
[Ref.: #69278]	Cultivation medium used	ISP 4

[Ref.: #69278]	Colony color	Oyster white (1013), pastel orange (2003)
[Ref.: #69278]	Cultivation medium used	ISP 7

[Ref.: #69278]	Colony color	Oyster white (1013), pastel orange (2003)
[Ref.: #69278]	Cultivation medium used	suter with tyrosine

[Ref.: #69278]	Colony color	Oyster white (1013), pastel orange (2003)
[Ref.: #69278]	Cultivation medium used	suter without tyrosine

[Ref.: #69278]	Colony color	Salmon orange (2012)
[Ref.: #69278]	Cultivation medium used	ISP 5

[Ref.: #69278]	Colony color	Signal orange (2010), red orange (2001)
[Ref.: #69278]	Cultivation medium used	ISP 6

[Ref.: #69498]	Incubation period	28 days
[Ref.: #69498]	Cultivation medium used	ISP 3

[Ref.: #69278]	Pigment production	no
[Ref.: #69278]	Pigment name	Melanin
[Ref.: #69278]	Pigment production	no
[Ref.: #69278]	Pigment name	soluble pigment

[Ref.: #69278]	Multicellular complex forming ability	no
[Ref.: #69278]	Multicellular complex name	Aerial mycelium
[Ref.: #69278]	Medium Name (multicellularity)	ISP 2

[Ref.: #69278]	Multicellular complex forming ability	no
[Ref.: #69278]	Multicellular complex name	Aerial mycelium
[Ref.: #69278]	Medium Name (multicellularity)	ISP 3

[Ref.: #69278]	Multicellular complex forming ability	no
[Ref.: #69278]	Multicellular complex name	Aerial mycelium
[Ref.: #69278]	Medium Name (multicellularity)	ISP 4

[Ref.: #69278]	Multicellular complex forming ability	no
[Ref.: #69278]	Multicellular complex name	Aerial mycelium
[Ref.: #69278]	Medium Name (multicellularity)	ISP 5

[Ref.: #69278]	Multicellular complex forming ability	no
[Ref.: #69278]	Multicellular complex name	Aerial mycelium
[Ref.: #69278]	Medium Name (multicellularity)	ISP 6

[Ref.: #69278]	Multicellular complex forming ability	no
[Ref.: #69278]	Multicellular complex name	Aerial mycelium
[Ref.: #69278]	Medium Name (multicellularity)	ISP 7

[Ref.: #69278]	Multicellular complex forming ability	no
[Ref.: #69278]	Multicellular complex name	Aerial mycelium
[Ref.: #69278]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69278]	Multicellular complex forming ability	no
[Ref.: #69278]	Multicellular complex name	Aerial mycelium
[Ref.: #69278]	Medium Name (multicellularity)	suter without tyrosine

[Ref.: #69498]	Multicellular complex forming ability	yes
[Ref.: #69498]	Multicellular complex name	branched non-fragmented substrate mycelium with aerial hyphae
[Ref.: #69498]	Multicellular complex further description	no sporangia

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

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Culture medium

OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ISP 1

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Culture medium growth

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Culture medium

ISP 2

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Culture medium growth

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Culture medium

ISP 3

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Culture medium growth

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Culture medium

ISP 4

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Culture medium growth

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Culture medium

Czapek's Agar

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Bennett's agar media

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Culture medium growth

		Temperature
[Ref.: #67749]	growth	28 °C
[Ref.: #69498]	growth	20.0-45.0 °C
[Ref.: #69498]	optimum	28 °C

[Ref.: #67749]	Temperature range	mesophilic
[Ref.: #69498]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #69498]			optimum	7
[Ref.: #69498]			growth	5.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69498]

Oxygen tolerance

aerobe

[Ref.: #69498]	Spore description	Longitudinal pairs spores were borne on short sporophores branching from aerial hyphae. Non-motile spores (0.92-1.43 to 0.96-1.54 µm) were oval and the surface was smooth.
[Ref.: #69498]	Type of spore	spore
[Ref.: #69498]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Salt		Salt conc.
[Ref.: #69278]	NaCl	growth	0	%
[Ref.: #69498]	NaCl	growth	0.0-2.5	%(w/v)
[Ref.: #69498]	NaCl	optimum	0.0-1.0	%(w/v)

[Ref.: #69498]	Observation	The cell wall contains meso diaminopimelic acid as the diagnostic diaminoacid.
[Ref.: #69498]	Observation	The polar lipid profile contains diphosphatidylglycerol, phosphatidylmonomethylethanolamine, phosphatidylethanolamine, two ninhydrin-positive glycophospholipids, phosphoglycolipid, phosphatidylinositol, two phosphatidylinositol mannosides.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69278]	arabinose ChEBI	+	growth
[Ref.: #69278]	cellulose ChEBI	+/-	growth
[Ref.: #69498]	cellulose ChEBI	-	assimilation
[Ref.: #69498]	creatine ChEBI	+	nitrogen source
[Ref.: #69498]	D-fructose ChEBI	+	carbon source
[Ref.: #69498]	D-galactose ChEBI	-	carbon source
[Ref.: #69498]	D-glucose ChEBI	+	carbon source
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69498]	D-mannitol ChEBI	-	carbon source
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #69498]	D-mannose ChEBI	-	carbon source
[Ref.: #69498]	D-ribose ChEBI	-	carbon source
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69498]	D-sorbitol ChEBI	+	carbon source
[Ref.: #69498]	D-xylose ChEBI	-	carbon source
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69498]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69278]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69278]	glucose ChEBI	+	growth
[Ref.: #69498]	glycine ChEBI	-	nitrogen source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69278]	inositol ChEBI	+	growth
[Ref.: #69498]	L-alanine ChEBI	+	nitrogen source
[Ref.: #69498]	L-arabinose ChEBI	-	carbon source
[Ref.: #69498]	L-arginine ChEBI	+	nitrogen source
[Ref.: #69498]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #69498]	L-aspartate ChEBI	+	nitrogen source
[Ref.: #69498]	L-glutamate ChEBI	+	nitrogen source
[Ref.: #69498]	L-glutamine ChEBI	+	nitrogen source
[Ref.: #69498]	L-proline ChEBI	+	nitrogen source
[Ref.: #69498]	L-rhamnose ChEBI	-	carbon source
[Ref.: #69498]	L-serine ChEBI	+	nitrogen source
[Ref.: #69498]	L-threonine ChEBI	-	nitrogen source
[Ref.: #69498]	L-tyrosine ChEBI	-	nitrogen source
[Ref.: #69498]	lactose ChEBI	-	carbon source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69498]	maltose ChEBI	-	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69278]	mannose ChEBI	+	growth
[Ref.: #69498]	myo-inositol ChEBI	-	carbon source
[Ref.: #69498]	nitrate ChEBI	-	reduction
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #69278]	raffinose ChEBI	+/-	growth
[Ref.: #69498]	raffinose ChEBI	+	carbon source
[Ref.: #69278]	rhamnose ChEBI	+/-	growth
[Ref.: #69498]	starch ChEBI	-	hydrolysis
[Ref.: #69278]	sucrose ChEBI	+	growth
[Ref.: #69498]	sucrose ChEBI	+	carbon source
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69498]	tween 20 ChEBI	-	assimilation
[Ref.: #69498]	tween 40 ChEBI	-	assimilation
[Ref.: #69498]	tween 80 ChEBI	-	assimilation
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69278]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #69498]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #69498]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #69498]	gelatinase	-
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #69498]	urease	-	3.5.1.5
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69278]	3772	+	-	-	+	-	-	+	+	+	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69278]	5956	not determinedn.d.	+	+	+/-	+/-	+	+	+	+	-	+	+	-	-	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67749]	Sample type/isolated from	Ear of wheat
[Ref.: #67749]	Geographic location (country and/or sea, region)	Henan province, Zhumadian (32° 98' N, 114° 02' E)
[Ref.: #67749]	Country	China
[Ref.: #67749]	Country ISO 3 Code	CHN
[Ref.: #67749]	Continent	Asia

[Ref.: #69498]	Sample type/isolated from	sample collected from ear of wheat from Triticum aestivum L.
[Ref.: #69498]	Geographic location (country and/or sea, region)	Zhumadian, Henan Province
[Ref.: #69498]	Country	China
[Ref.: #69498]	Country ISO 3 Code	CHN
[Ref.: #69498]	Continent	Asia
[Ref.: #69498]	Geographic location	32.9800°/114.0200°
[Ref.: #69498]	Enrichment culture	Gause's synthetic agar No.1
[Ref.: #69498]	Enrichment culture composition	Supplemented with cycloheximide (50 mg/l) and nalidixic acid (20 mg/l).
[Ref.: #69498]	Enrichment culture duration	28 days
[Ref.: #69498]	Enrichment culture temperature	28 ̊C
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MK825340 (>99% sequence identity) for Microbispora from Microbeatlas

Aquatic Samples	9
Soil Samples	241
Animal Samples	13
Plant Samples	43
Total Samples	306

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67749]	Microbispora sp. strain NEAU-HEGS1-5 16S ribosomal RNA gene, partial sequence	MK825340	1514	ENA	2576905 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #69498]	genome sequence	VANP00000000		GenBank	2576905 tax ID
[Ref.: #66792]	Microbispora fusca NEAU-HEGS1-5	GCA_005864065	scaffold	GenBank	2576905 tax ID	*
[Ref.: #66792]	Microbispora fusca NEAU-HEGS1-5	2891516887	draft	JGI IMG/M	2576905 tax ID	*

[Ref.: #69498]

GC-content

71.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microbispora fusca NEAU-HEGS1-5 NCBI: GCA_005864065.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbispora fusca NEAU-HEGS1-5 NCBI: GCA_005864065.1
[Ref.: #69480]	motile	no	93.618	no
[Ref.: #69480]	flagellated	no	98.334	no
[Ref.: #69480]	gram-positive	yes	90.361	no
[Ref.: #69480]	anaerobic	no	99.325	no
[Ref.: #69480]	aerobic	yes	93.181	no
[Ref.: #69480]	halophile	no	93.867	yes
[Ref.: #69480]	spore-forming	yes	94.333	no
[Ref.: #69480]	thermophile	no	98.153	yes
[Ref.: #69480]	glucose-util	yes	89.775	yes
[Ref.: #69480]	glucose-ferment	no	93.503	no

Availability in culture collections External links

[Ref.: #67749]

Culture collection no.

DSM 104648, CCTCC AA 2019030

[Ref.: #113020]

SI-ID 407154

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbispora sitophila sp. nov., a novel actinobacterium isolated from rhizosphere soil of wheat (Triticum aestivum L.).	Guo L, Li Z, Xu X, Pang Q, Zhao J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004684	2021	*
Phylogeny	Microbispora clausenae sp. nov., an endophytic actinobacterium isolated from the surface-sterilized stem of a Thai medicinal plant, Clausena excavala Burm. f.	Kaewkla O, Koomsiri W, Thamchaipenet A, Franco CMM	Int J Syst Evol Microbiol	10.1099/ijsem.0.004518	2020	*
Phylogeny	Microbispora cellulosiformans sp. nov., a novel actinomycete with cellulase activity isolated from soil in the cold region.	Gong X, Xiang W, Cao X, Yu Y, Hao Y, Li L, Wang Q, Zou H, Qian C	Antonie Van Leeuwenhoek	10.1007/s10482-020-01477-4	2020	*
Phylogeny	Microbispora fusca sp. nov., a novel actinomycete isolated from the ear of wheat (Triticum aestivum L.).	Zhao J, Yu B, Han C, Cao P, Yu Z, Ju H, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003725	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67749

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104648

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69278

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69498

Heeyoung Kang, Haneul Kim, Inseong Cha, Kiseong Joh: Microbispora fusca sp. nov., a novel actinomycete isolated from the ear of wheat (Triticum aestivum L.). IJSEM 70: 2020 ( DOI 10.1099/ijsem.0.003725 )

#113020

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407154.1 )

* These data were automatically processed and therefore are not curated

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