Name: Pandoraea fibrosis 7641
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160790

Type strain:

Species: Pandoraea fibrosis

Strain Designation: 7641

Culture col. no.: DSM 103229

Strain history: <- R. Ee, Univ. of Malaya, Kuala Lumpur, Malaysia; 7641 <- Royal Hobart Hospital, Dept. of Microbiology staff, Tasmania, Australia

NCBI tax ID(s): 1891094 (species)

SI-ID 403827

DSM 103229

Other strains from Pandoraea fibrosis

P. fibrosis 6399, DSM 103228 (type strain)

Section

Pandoraea fibrosis 7641 is a mesophilic bacterium that was isolated from sputum of cystic fibrosis patient.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Pandoraea*
	Species	**Pandoraea fibrosis**
	Full Scientific Name (LPSN)	Pandoraea fibrosis See-Too et al. 2019

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67727]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67727]			growth	37 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #67727]	25058	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+	+	-
[Ref.: #67727]	25057	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+/-	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67727]	Sample type/isolated from	sputum of cystic fibrosis patient
[Ref.: #67727]	Geographic location (country and/or sea, region)	Tasmania
[Ref.: #67727]	Country	Australia
[Ref.: #67727]	Country ISO 3 Code	AUS
[Ref.: #67727]	Continent	Australia and Oceania
[Ref.: #67727]	Geographic location	-42.8799°/147.3240°
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KX712096 (>99% sequence identity) for Pandoraea from Microbeatlas

Aquatic Samples	4192
Soil Samples	6943
Animal Samples	3605
Plant Samples	5843
Total Samples	20583

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67727]	Pandoraea fibrosis strain 7641 16S ribosomal RNA gene, partial sequence	KX712096	1519	ENA	1891094 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pandoraea fibrosis 7641	GCA_000807785	complete	GenBank	1891094 tax ID	*

[Ref.: #67727]

GC-content

62.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pandoraea fibrosis 7641 NCBI: GCA_000807785.1
[Ref.: #69480]	motile	yes	90.573	no
[Ref.: #69480]	flagellated	no	64.9	no
[Ref.: #69480]	gram-positive	no	98.82	no
[Ref.: #69480]	anaerobic	no	99.374	no
[Ref.: #69480]	aerobic	yes	93.781	no
[Ref.: #69480]	halophile	no	91.47	no
[Ref.: #69480]	spore-forming	no	95.357	no
[Ref.: #69480]	glucose-util	yes	63.66	yes
[Ref.: #69480]	thermophile	no	99.196	no
[Ref.: #69480]	glucose-ferment	no	89.93	no
[Ref.: #69480]	motile	yes	90.573	no
[Ref.: #69480]	flagellated	no	64.9	no
[Ref.: #69480]	gram-positive	no	98.82	no
[Ref.: #69480]	anaerobic	no	99.374	no
[Ref.: #69480]	aerobic	yes	93.781	no
[Ref.: #69480]	halophile	no	91.47	no
[Ref.: #69480]	spore-forming	no	95.357	no
[Ref.: #69480]	glucose-util	yes	63.66	yes
[Ref.: #69480]	glucose-ferment	no	89.93	no
[Ref.: #69480]	thermophile	no	99.196	no

Availability in culture collections External links

[Ref.: #67727]

Culture collection no.

DSM 103229

[Ref.: #113005]

SI-ID 403827

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pandoraea fibrosis sp. nov., a novel Pandoraea species isolated from clinical respiratory samples.	See-Too WS, Ambrose M, Malley R, Ee R, Mulcahy E, Manche E, Lazenby J, McEwan B, Pagnon J, Chen JW, Chan KG, Turnbull L, Whitchurch CB, Roddam LF	Int J Syst Evol Microbiol	10.1099/ijsem.0.003147	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67727

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103229

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#113005

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403827.1 )

* These data were automatically processed and therefore are not curated

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