Name: Pandoraea fibrosis 6399
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160789

Type strain:

Species: Pandoraea fibrosis

Strain Designation: 6399

Culture col. no.: DSM 103228

Strain history: <- R. Ee, Univ. of Malaya, Kuala Lumpur, Malaysia; 6399 <- Royal Hobart Hospital, Dept. of Microbiology staff, Tasmania, Australia

NCBI tax ID(s): 1891094 (species)

SI-ID 408377

DSM 103228

Other strains from Pandoraea fibrosis

P. fibrosis 7641, DSM 103229

Section

Pandoraea fibrosis 6399 is a mesophilic, motile bacterium that was isolated from sputumof cystic fibrosis patient.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Pandoraea*
	Species	**Pandoraea fibrosis**
	Full Scientific Name (LPSN)	Pandoraea fibrosis See-Too et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.963

[Ref.: #69480]	Motility	yes Confidence in %95.669

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67726]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #67726]

Culture medium growth

[Ref.: #67726]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67726]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67726]			growth	37 °C

[Ref.: #67726]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.943
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67726]	Sample type/isolated from	sputumof cystic fibrosis patient
[Ref.: #67726]	Geographic location (country and/or sea, region)	Tasmania
[Ref.: #67726]	Country	Australia
[Ref.: #67726]	Country ISO 3 Code	AUS
[Ref.: #67726]	Continent	Australia and Oceania
[Ref.: #67726]	Geographic location	-42.8819°/147.3240°
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KX712083 (>99% sequence identity) for Pandoraea from Microbeatlas

Aquatic Samples	4192
Soil Samples	6943
Animal Samples	3605
Plant Samples	5843
Total Samples	20583

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67726]	Pandoraea fibrosis strain 6399 16S ribosomal RNA gene, partial sequence	KX712083	1537	ENA	1891094 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pandoraea fibrosis 6399	GCA_000807775	complete	GenBank	1891094 tax ID	*

[Ref.: #67726]

GC-content

62.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pandoraea fibrosis 6399 NCBI: GCA_000807775.2
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pandoraea fibrosis 6399 NCBI: GCA_000807775.1
[Ref.: #69480]	motile	yes	90.573	no
[Ref.: #69480]	flagellated	no	64.9	no
[Ref.: #69480]	gram-positive	no	98.82	no
[Ref.: #69480]	anaerobic	no	99.374	no
[Ref.: #69480]	aerobic	yes	93.781	no
[Ref.: #69480]	halophile	no	91.47	no
[Ref.: #69480]	spore-forming	no	95.357	no
[Ref.: #69480]	glucose-util	yes	63.66	no
[Ref.: #69480]	thermophile	no	99.196	no
[Ref.: #69480]	glucose-ferment	no	89.93	no
[Ref.: #69480]	motile	yes	90.573	no
[Ref.: #69480]	flagellated	no	64.9	no
[Ref.: #69480]	gram-positive	no	98.82	no
[Ref.: #69480]	anaerobic	no	99.374	no
[Ref.: #69480]	aerobic	yes	93.781	no
[Ref.: #69480]	halophile	no	91.47	no
[Ref.: #69480]	spore-forming	no	95.357	no
[Ref.: #69480]	glucose-util	yes	63.66	no
[Ref.: #69480]	thermophile	no	99.196	no
[Ref.: #69480]	glucose-ferment	no	89.93	no

Availability in culture collections External links

[Ref.: #67726]

Culture collection no.

DSM 103228

[Ref.: #113004]

SI-ID 408377

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pandoraea fibrosis sp. nov., a novel Pandoraea species isolated from clinical respiratory samples.	See-Too WS, Ambrose M, Malley R, Ee R, Mulcahy E, Manche E, Lazenby J, McEwan B, Pagnon J, Chen JW, Chan KG, Turnbull L, Whitchurch CB, Roddam LF	Int J Syst Evol Microbiol	10.1099/ijsem.0.003147	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67726

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103228

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113004

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408377.1 )

* These data were automatically processed and therefore are not curated

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