Name: Desertihabitans aurantiacus DSM 105431
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 160770

Type strain:

Species: Desertihabitans aurantiacus

Culture col. no.: DSM 105431, KCTC 39977, CPCC 204711

Strain history: <- Y.-Q. Zhang, Chinese Acad. Med. Sciences & Peking Union Medical College, Beijing, China; CPCC 204711 <- Y. Sun

NCBI tax ID(s): 2282477 (species)

SI-ID 397405

DSM 105431

Special Collections

Section

Desertihabitans aurantiacus DSM 105431 is a Gram-positive, coccus-shaped bacterium that forms circular colonies and was isolated from desert sand sample.

coccus-shaped
colony-forming
Gram-positive
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Propionibacteriaceae*
	Genus	*Desertihabitans*
	Species	**Desertihabitans aurantiacus**
	Full Scientific Name (LPSN)	Desertihabitans aurantiacus Sun et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67989]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %90.933

[Ref.: #67989]	Cell length	0.8-1.3 µm

[Ref.: #67989]	Cell shape	coccus-shaped

[Ref.: #67989]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.5

[Ref.: #67989]	Colony size	1.1-1.8 mm
[Ref.: #67989]	Colony color	orange
[Ref.: #67989]	Colony shape	circular
[Ref.: #67989]	Cultivation medium used	PYG

[Ref.: #67989]	Pigment production	no
[Ref.: #67989]	Pigment name	diffusible pigments

Information on culture and growth conditions Culture and growth conditions

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Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #67708]	growth	28 °C
[Ref.: #67989]	growth	20-40 °C
[Ref.: #67989]	optimum	28 °C

	pH	Kind of pH		pH
[Ref.: #67989]			optimum	7
[Ref.: #67989]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67989]		NaCl		growth	0.0-5.0	%(w/v)
[Ref.: #67989]		NaCl		optimum	0.0-1.0	%(w/v)

[Ref.: #67989]	Observation	galactose, arabinose and ribose are detected in the whole cell sugars
[Ref.: #67989]	Observation	containing diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), phosphatidylcholine (PC), several unidentified glycolipids (un GL), and one unidentified amino-glylipid (un AGL) as the major polar lipids
[Ref.: #67989]	Observation	The peptidoglycan type is A3gamma, with LL-Dpm-Gly as distinctive feature
[Ref.: #67989]	Observation	The predominant menaquinone is MK-9(H4)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67989]	2-oxogluconate	+	carbon source
[Ref.: #67989]	acetic acid ChEBI	+	carbon source
[Ref.: #67989]	acetoacetate ChEBI	+	carbon source
[Ref.: #67989]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #67989]	carboxymethylcellulose ChEBI	+	hydrolysis
[Ref.: #67989]	cellobiose ChEBI	+	carbon source
[Ref.: #67989]	D-fructose ChEBI	+	carbon source
[Ref.: #67989]	D-fucose ChEBI	+	carbon source
[Ref.: #67989]	D-galactose ChEBI	+	carbon source
[Ref.: #67989]	D-galacturonic acid ChEBI	+	carbon source
[Ref.: #67989]	D-gluconate ChEBI	+	carbon source
[Ref.: #67989]	D-glucuronate ChEBI	+	carbon source
[Ref.: #67989]	D-mannose ChEBI	+	carbon source
[Ref.: #67989]	D-salicin ChEBI	+	carbon source
[Ref.: #67989]	D-serine ChEBI	+	carbon source
[Ref.: #67989]	dextrin ChEBI	+	carbon source
[Ref.: #67989]	fusidate ChEBI	+	carbon source
[Ref.: #67989]	gelatin ChEBI	-	hydrolysis
[Ref.: #67989]	gentiobiose ChEBI	+	carbon source
[Ref.: #67989]	L-aspartate ChEBI	+	carbon source
[Ref.: #67989]	L-fucose ChEBI	+	carbon source
[Ref.: #67989]	L-lactate	+	carbon source
[Ref.: #67989]	L-pyroglutamic acid ChEBI	+	carbon source
[Ref.: #67989]	L-rhamnose ChEBI	+	carbon source
[Ref.: #67989]	lactose ChEBI	+	carbon source
[Ref.: #67989]	lincomycin ChEBI	+	carbon source
[Ref.: #67989]	maltose ChEBI	+	carbon source
[Ref.: #67989]	melibiose ChEBI	+	carbon source
[Ref.: #67989]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #67989]	milk	-	assimilation
[Ref.: #67989]	N-acetyl-D-glucosamine ChEBI	+	carbon source
[Ref.: #67989]	N-acetylgalactosamine ChEBI	+	carbon source
[Ref.: #67989]	nitrate ChEBI	+	reduction
[Ref.: #67989]	raffinose ChEBI	+	carbon source
[Ref.: #67989]	spectinomycin ChEBI	+	carbon source
[Ref.: #67989]	stachyose ChEBI	+	carbon source
[Ref.: #67989]	starch ChEBI	-	hydrolysis
[Ref.: #67989]	sucrose ChEBI	+	carbon source
[Ref.: #67989]	trehalose ChEBI	+	carbon source
[Ref.: #67989]	turanose ChEBI	+	carbon source
[Ref.: #67989]	tween 40 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #67989]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #67989]	acid phosphatase	+	3.1.3.2
[Ref.: #67989]	alkaline phosphatase	+	3.1.3.1
[Ref.: #67989]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #67989]	alpha-galactosidase	+	3.2.1.22
[Ref.: #67989]	alpha-glucosidase	+	3.2.1.20
[Ref.: #67989]	alpha-mannosidase	+	3.2.1.24
[Ref.: #67989]	beta-glucuronidase	+	3.2.1.31
[Ref.: #67989]	catalase	+	1.11.1.6
[Ref.: #67989]	cystine arylamidase	+	3.4.11.3
[Ref.: #67989]	cytochrome oxidase	-	1.9.3.1
[Ref.: #67989]	esterase (C 4)	+
[Ref.: #67989]	esterase Lipase (C 8)	+
[Ref.: #67989]	leucine arylamidase	+	3.4.11.1
[Ref.: #67989]	lipase (C 14)	+
[Ref.: #67989]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #67989]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #67989]	nitrate reductase	+	1.7.99.4
[Ref.: #67989]	trypsin	+	3.4.21.4
[Ref.: #67989]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #67989]

Fatty acid	Percentage
C15:0 anteiso	70.5
C15:0 iso	6.8
C16:0 iso	5.2
C14:0 iso	4.5
C17:0 anteiso	2.2
C18:0	1.9
C20:0	1.6
C16:0	1.4
C14:0 iso 3OH	0.8
C14:0 2OH	0.7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67708]	Sample type/isolated from	desert sand sample
[Ref.: #67708]	Geographic location (country and/or sea, region)	Neimenggu Province (39° 44' 04'' N, 102° 02' 06'' E)
[Ref.: #67708]	Country	China
[Ref.: #67708]	Country ISO 3 Code	CHN
[Ref.: #67708]	Continent	Asia

[Ref.: #67989]	Sample type/isolated from	desert sand sample, 1147 mH
[Ref.: #67989]	Sampling date	2015-10
[Ref.: #67989]	Geographic location (country and/or sea, region)	Badain Jaran Desert in Inner Mongolia
[Ref.: #67989]	Country	China
[Ref.: #67989]	Country ISO 3 Code	CHN
[Ref.: #67989]	Continent	Asia
[Ref.: #67989]	Geographic location	39.7333°/102.0330°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67708]	Desertihabitans aurantiacus strain CPCC 204711 16S ribosomal RNA gene, partial sequence	MH507190	1470	GenBank ENA	2282477 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67989]	Desertihabitans aurantiacus CPCC 204711	GCA_003344635	contig	GenBank ENA	2282477 tax ID
[Ref.: #66792]	Propionibacteriaceae bacterium CPCC 204711	2282477.3	wgs	PATRIC	2282477 tax ID	*
[Ref.: #66792]	Desertihabitans aurantiacus CPCC 204711	2848708460	draft	JGI IMG/M	2282477 tax ID	*

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GC-content

73.1 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Propionibacteriaceae bacterium CPCC 204711 PATRIC: 2282477.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	76	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Propionibacteriaceae bacterium CPCC 204711 PATRIC: 2282477.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.933	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.46	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	67.688	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.869	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.025	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93.5	yes

Availability in culture collections External links

[Ref.: #67708]

Culture collection no.

DSM 105431, KCTC 39977, CPCC 204711

[Ref.: #112989]

SI-ID 397405

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Auraticoccus cholistanensis sp. nov., an actinomycete isolated from soil of the Cholistan Desert, and emended description of the genus Auraticoccus.	Cheema MT, Ye JJ, Li FN, Lu QP, Abbas M, Sajid I, Huang DL, Liu SW, Sun CH	Int J Syst Evol Microbiol	10.1099/ijsem.0.004152	2020	*
Phylogeny	Desertihabitans brevis sp. nov., an actinobacterium isolated from sand of the Taklamakan desert, and emended description of the genus Desertihabitans.	Liu SW, Li FN, Liu HY, Yu LY, Sun CH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003896	2020	*
Phylogeny	Desertihabitans aurantiacus gen. nov., sp. nov., a novel member of the family Propionibacteriaceae.	Sun Y, Wang H, Zhang T, Liu WH, Liu HY, Yu LY, Zhang YQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003519	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67708

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105431

#67989

Ye Sun, Hao Wang, Tao Zhang, Wei-Hong Liu, Hong-Yu Liu, Li-Yan Yu, Yu-Qin Zhang: Desertihabitans aurantiacus gen. nov., sp. nov., a novel member of the family Propionibacteriaceae. IJSEM 69: 2486 - 2491 2019 ( DOI 10.1099/ijsem.0.003519 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112989

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397405.1 )

* These data were automatically processed and therefore are not curated

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Propionibacteriaceae bacterium CPCC 204711

Propionibacteriaceae bacterium CPCC 204711

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