Name: Deinococcus populi PtRA-8
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160769

Type strain:

Species: Deinococcus populi

Strain Designation: PtRA-8

Culture col. no.: DSM 29820, NBRC 110763

Strain history: <- A. Tonouchi, Faculty Agriculture and Life Sci., Hirosaki Univ., Japan; PtRA-8 <- U. Hiroaki

NCBI tax ID(s): 1573654 (species)

Section

Deinococcus populi PtRA-8 is a mesophilic bacterium that was isolated from a Japanese aspen tree Populus tremula var. sieboldii.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	"Deinococcus populi"
	Full Scientific Name (LPSN)	Deinococcus populi Li et al. 2018

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67707]

Culture medium

PLATE COUNT AGAR (DSMZ Medium 464)

[Ref.: #67707]

Culture medium growth

[Ref.: #67707]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67707]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67707]			growth	28 °C

[Ref.: #67707]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67707]	Sample type/isolated from	a Japanese aspen tree Populus tremula var. sieboldii
[Ref.: #67707]	Geographic location (country and/or sea, region)	Aomori Prefecture, Nishimeya Village, Kawaratai
[Ref.: #67707]	Country	Japan
[Ref.: #67707]	Country ISO 3 Code	JPN
[Ref.: #67707]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC011389 (>99% sequence identity) for Deinococcus populi subclade from Microbeatlas

Aquatic Samples	43
Soil Samples	36
Animal Samples	26
Plant Samples	17
Total Samples	122

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67707]	Deinococcus populi gene for 16S ribosomal RNA, partial sequence	LC011389	1435	ENA	1573654 tax ID

Availability in culture collections External links

[Ref.: #67707]

Culture collection no.

DSM 29820, NBRC 110763

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Deinococcus populi sp. nov. from the trunk surface of a Japanese aspen tree.	Li J, Kudo C, Tonouchi A	Arch Microbiol	10.1007/s00203-017-1443-5	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67707

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29820

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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