Name: Colibacter massiliensis DSM 103304
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 160767

Type strain:

Species: Colibacter massiliensis

Culture col. no.: DSM 103304, Marseille-P2911

Strain history: <- F. Cadoret, Timone Hospital, Marseille, France; Marseille-P2911 <- Unité de Recherche pour les Maladies Tropicales Emergentes, Fédération de Bactériologie Viorologie Hygiène Hospitalière

NCBI tax ID(s): 1852379 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Colibacter massiliensis DSM 103304 is a mesophilic bacterium that was isolated from Colon sample from patient.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Negativicutes*
	Order	*Veillonellales*
	Family	*Veillonellaceae*
	Genus	"Colibacter"
	Species	"Colibacter massiliensis"
	Full Scientific Name (LPSN)	Colibacter massiliensis Mailhe et al. 2017

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67705]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #67705]

Culture medium growth

[Ref.: #67705]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67705]

Culture medium composition

expand / minimize

[Ref.: #67705]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #67705]

Culture medium growth

[Ref.: #67705]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67705]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67705]			growth	37 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67705]	Sample type/isolated from	Colon sample from patient
[Ref.: #67705]	Geographic location (country and/or sea, region)	Marseille
[Ref.: #67705]	Country	France
[Ref.: #67705]	Country ISO 3 Code	FRA
[Ref.: #67705]	Continent	Europe
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LT576403 (>99% sequence identity) for Colibacter massiliensis subclade from Microbeatlas

Aquatic Samples	388
Soil Samples	167
Animal Samples	14373
Plant Samples	37
Total Samples	14965

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67705]	Colibacter massiliensis partial 16S rRNA gene, type strain Marseille-P2911T	LT576403	1532	GenBank ENA	1852379 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Colibacter massiliensis Marseille-P2911T	GCA_900095855	contig	GenBank ENA	1852379 tax ID	*
[Ref.: #66792]	Colibacter massiliensis Marseille-P2911	2788500036	draft	JGI IMG/M	1852379 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Colibacter massiliensis Marseille-P2911T NCBI: GCA_900095855
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	75.2
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	83.3
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	variable	80.2
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	facultative anaerobe	84.9

Availability in culture collections External links

[Ref.: #67705]

Culture collection no.

DSM 103304, Marseille-P2911

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Colibacter massiliensis gen. nov. sp. nov., a novel Gram-stain-positive anaerobic diplococcal bacterium, isolated from the human left colon.	Anani H, Abdallah RA, Khoder M, Fontanini A, Mailhe M, Ricaboni D, Raoult D, Fournier PE	Sci Rep	10.1038/s41598-019-53791-1	2019	*
Phylogeny	'Colibacter massiliensis' gen. nov., sp. nov., a new bacterial species isolated from human left colon.	Mailhe M, Ricaboni D, Vitton V, Cadoret F, Fournier PE, Raoult D	New Microbes New Infect	10.1016/j.nmni.2016.11.018	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67705

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103304

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Colibacter massiliensis Marseille-P2911T

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