Name: Klenkia marina DSM 45722
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160762

Type strain:

Species: Klenkia marina

Culture col. no.: DSM 45722, YIM M13156, CCTCC AB 2012057

Strain history: <- S.-K. Tang, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM M13156 <- D.-F. Zhang, Yunnan University, China

NCBI tax ID(s): 1960309 (species)

SI-ID 400256

DSM 45722

Section

Klenkia marina DSM 45722 is a mesophilic, Gram-positive bacterium that was isolated from marine sediments.

Gram-positive
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Geodermatophilales*
	Family	*Geodermatophilaceae*
	Genus	*Klenkia*
	Species	**Klenkia marina**
	Full Scientific Name (LPSN)	Klenkia marina Montero-Calasanz et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67696]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #67696]

Culture medium growth

[Ref.: #67696]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #67696]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #67696]

Culture medium growth

[Ref.: #67696]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67696]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67696]			growth	28 °C

[Ref.: #67696]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.654

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67696]	Sample type/isolated from	marine sediments
[Ref.: #67696]	Geographic location (country and/or sea, region)	South China Sea
[Ref.: #67696]	Country	China
[Ref.: #67696]	Country ISO 3 Code	CHN
[Ref.: #67696]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Klenkia marina DSM 45722	GCA_900101025	contig	GenBank	1960309 tax ID	*
[Ref.: #66792]	Klenkia marina strain DSM 45722	1960309.3	wgs	PATRIC	1960309 tax ID	*
[Ref.: #66792]	Actinobacteria bacterium DSM 45722	2602042045	draft	JGI IMG/M	1960309 tax ID	*

[Ref.: #67696]

GC-content

74.4 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Klenkia marina strain DSM 45722 PATRIC: 1960309.3
[Ref.: #69481]	spore-forming	no	73	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Klenkia marina strain DSM 45722 PATRIC: 1960309.3
[Ref.: #69480]	motile	yes	81.982	no
[Ref.: #69480]	gram-positive	yes	93.045	no
[Ref.: #69480]	anaerobic	no	98.592	no
[Ref.: #69480]	aerobic	yes	91.802	no
[Ref.: #69480]	halophile	no	93.326	no
[Ref.: #69480]	spore-forming	no	76.348	no
[Ref.: #69480]	glucose-util	yes	87.421	no
[Ref.: #69480]	flagellated	no	91.4	no
[Ref.: #69480]	thermophile	no	99.132	yes
[Ref.: #69480]	glucose-ferment	no	88.742	no

Availability in culture collections External links

[Ref.: #67696]

Culture collection no.

DSM 45722, YIM M13156, CCTCC AB 2012057

[Ref.: #112986]

SI-ID 400256

Literature:

	Title	Authors	Journal	DOI	Year
	Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae.	Montero-Calasanz MDC, Meier-Kolthoff JP, Zhang DF, Yaramis A, Rohde M, Woyke T, Kyrpides NC, Schumann P, Li WJ, Goker M	Front Microbiol	10.3389/fmicb.2017.02501	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67696

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45722

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112986

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400256.1 )

* These data were automatically processed and therefore are not curated

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Klenkia marina strain DSM 45722

Klenkia marina strain DSM 45722

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