Streptomyces siamensis (TISTR 2107, JCM 18409, DSM 111620)

Name: Streptomyces siamensis (TISTR 2107, JCM 18409, DSM 111620)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160740

Type strain

Strain Designation KC-038

Culture col. no. TISTR 2107 JCM 18409 DSM 111620 NBRC 108799 PCU 328 2 more

NCBI tax ID(s) 1274986

Special Collections DSMZ JCM

History JCM <-- S. Tanasupawat; Chulalongkorn Univ., Thailand; KC-038.

Links

Streptomyces siamensis KC-038 is a bacterium that was isolated from soil from the Krung Ching Waterfal.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 399353

NBRC 108799,JCM 18409,DSM 111620

@ref 20215

Last LPSN update 2026-05-29 08:44:31

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces siamensis

Full scientific name Streptomyces siamensis Sripreechasak et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	98.675
125439		90.188

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
67654	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
67654	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
67654	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
67654	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.298

Observation

67770

Observationquinones: MK-9(H₆), MK-9(H₄), MK-9(H₈)

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67654	soil from the Krung Ching Waterfal	Khao Luang National Park, Nakhon Si ThammaratProvince	Thailand	THA	Asia
67770	Soil from the Krung Ching Waterfall	Khao Luang National Park, Nakhon Si Thammarat Province	Thailand	THA	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
67654	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3954360v1 assembly for Streptomyces siamensis JCM 18409	scaffold	GCA_039543605	1274986	62.65

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Streptomyces siamensis gene for 16S ribosomal RNA, partial sequence, strain: KC-038	AB773848	1497		1274986

GC content

@ref	GC-content (mol%)	Method
67654	72	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3954360v1 assembly for Streptomyces siamensis JCM 18409
NCBI: GCA_039543605

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.30	no
125439	gram_stain	BacteriaNetⓘ	positive	98.68	no
125439	spore_formation	BacteriaNetⓘ	yes	65.48	no
125439	motility	BacteriaNetⓘ	no	90.19	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taxonomic Characterization, and Secondary Metabolite Analysis of Streptomyces triticiradicis sp. nov.: A Novel Actinomycete with Antifungal Activity.	Yu Z, Han C, Yu B, Zhao J, Yan Y, Huang S, Liu C, Xiang W	Microorganisms	10.3390/microorganisms8010077	2020
Phylogeny	Streptomyces lutosisoli sp. nov., a novel actinomycete isolated from muddy soil.	Shen Y, Sun T, Jiang S, Mu S, Li D, Guo X, Zhang J, Zhao J, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-018-1129-2	2018
Phylogeny	Streptomyces krungchingensis sp. nov., isolated from soil.	Sripreechasak P, Phongsopitanun W, Tamura T, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001570	2017
Phylogeny	Streptomyces rhizosphaerihabitans sp. nov. and Streptomyces adustus sp. nov., isolated from bamboo forest soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001236	2016
Phylogeny	Streptomyces siamensis sp. nov., and Streptomyces similanensis sp. nov., isolated from Thai soils.	Sripreechasak P, Matsumoto A, Suwanborirux K, Inahashi Y, Shiomi K, Tanasupawat S, Takahashi Y	J Antibiot (Tokyo)	10.1038/ja.2013.60	2013
Phylogeny	Streptomyces albiflavescens sp. nov., an actinomycete isolated from soil.	Han X, Zheng J, Xin D, Xin Y, Wei X, Zhang J	Int J Syst Evol Microbiol	10.1099/ijs.0.000121	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67654	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111620
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces siamensis (TISTR 2107, JCM 18409, DSM 111620)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039543605

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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