Name: Boseongicola aestuarii BS-W15
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 160713

Type strain:

Species: Boseongicola aestuarii

Strain Designation: BS-W15

Culture col. no.: DSM 110602, KCTC 32576, CECT 8489

Strain history: <- J.-S. Lee, KCTC; KCTC 32576 <- J.-H. Yoon, Sungkyunkwan Univ., Republic of Korea; BS-W15

NCBI tax ID(s): 1470561 (species)

SI-ID 394410

KCTC 32576, CECT 8489, DSM 110602

Special Collections

DSMZ
KCTC

Section

When using BacDive for research please cite our paper

Boseongicola aestuarii BS-W15 is a psychrophilic bacterium that was isolated from Tidal flat sediment.

psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Boseongicola*
	Species	**Boseongicola aestuarii**
	Full Scientific Name (LPSN)	Boseongicola aestuarii Park et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %98.833
[Ref.: #125439]	Gram stain	negative Confidence in %98.9

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67626]

Culture medium

HALF STRENGTH BACTO MARINE BROTH (DSMZ Medium 514a)

[Ref.: #67626]

Culture medium growth

[Ref.: #67626]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67626]

Culture medium composition

expand / minimize

[Ref.: #67626]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #67626]

Culture medium growth

[Ref.: #67626]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67626]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67626]			growth	20 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

obligate aerobe Confidence in %99.1

[Ref.: #125438]	Ability of spore formation	no Confidence in %91.605
[Ref.: #125439]	Ability of spore formation	no Confidence in %97.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67626]	Sample type/isolated from	Tidal flat sediment
[Ref.: #67626]	Geographic location (country and/or sea, region)	Boseong
[Ref.: #67626]	Country	Republic of Korea
[Ref.: #67626]	Country ISO 3 Code	KOR
[Ref.: #67626]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KF977837 (>99% sequence identity) for Boseongicola aestuarii subclade from Microbeatlas

Aquatic Samples	70
Soil Samples
Animal Samples	1
Plant Samples
Total Samples	71

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #67626]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67626]	Boseongicola aestuarii strain BS-W15 16S ribosomal RNA gene, partial sequence	KF977837	1391	GenBank ENA	1470561 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Boseongicola aestuarii CECT 8489	GCA_900184815	contig	GenBank ENA	1470561 tax ID	*
[Ref.: #66792]	Boseongicola aestuarii strain CECT 8489	1470561.10	wgs	PATRIC	1470561 tax ID	*
[Ref.: #66792]	Boseongicola aestuarii CECT 8489	2788500140	draft	JGI IMG/M	1470561 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Boseongicola aestuarii strain CECT 8489 PATRIC: 1470561.10
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	98.833	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	96.298	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	91.605	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	85.059	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	95.997	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	69.463	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Boseongicola aestuarii CECT 8489 NCBI: GCA_900184815
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	97.5
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	58.5
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	98.9
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	99.1

Availability in culture collections External links

[Ref.: #67626]

Culture collection no.

DSM 110602, KCTC 32576, CECT 8489

[Ref.: #112940]

SI-ID 394410

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Boseongicola aestuarii gen. nov., sp. nov., isolated from a tidal flat sediment.	Park S, Park JM, Lee KC, Bae KS, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.061960-0	2014	*
Phylogeny	Rhodophyticola porphyridii gen. nov., sp. nov., isolated from a red alga, Porphyridium marinum.	Jung HS, Jeong SE, Chun BH, Quan ZX, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.003371	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67626

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110602

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#112940

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID394410.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Boseongicola aestuarii strain CECT 8489

Boseongicola aestuarii CECT 8489

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