Cite this strain

"Oceanobacillus jeddahense" (DSM 28586, S5)

BacDive ID 160657

Type strain

Strain Designation S5

Culture col. no. DSM 28586 S5

NCBI tax ID(s) 1462527

Special Collections DSMZ Cadoret human gut

Links

"Oceanobacillus jeddahense" S5 is a mesophilic prokaryote that was isolated from human faeces.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 405201

DSM 28586

@ref 20215

Last LPSN update 2025-12-16 10:08:33

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Oceanobacillus

Species "Oceanobacillus jeddahense"

Full scientific name Oceanobacillus jeddahense Khelaifia et al. 2016

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67567	BHI MEDIUM (DSMZ Medium 215)		Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67567	positive	growth	30	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		95.3

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67567	human faeces	Jeddah	Saudi Arabia	SAU	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	PRJEB5524_assembly_1 assembly for Oceanobacillus jeddahense S5	contig	GCA_000750635	1462527.3	2617271237	1462527	49.85

Genome browser: GCA_000750635

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Oceanobacillus jeddahense S5
NCBI: GCA_000750635

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	95.30	no
125439	motility	BacteriaNetⓘ	yes	88.40	no
125439	gram_stain	BacteriaNetⓘ	variable	72.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	86.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbial Culturomics to Map Halophilic Bacterium in Human Gut: Genome Sequence and Description of Oceanobacillus jeddahense sp. nov.	Khelaifia S, Lagier JC, Bibi F, Azhar EI, Croce O, Padmanabhan R, Jiman-Fatani AA, Yasir M, Robert C, Andrieu C, Fournier PE, Raoult D	OMICS	10.1089/omi.2016.0004	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67567	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28586
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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"Oceanobacillus jeddahense" (DSM 28586, S5)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000750635

Genome-based predictions

Predictions

Literature

Literature

References

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