Cite this strain

"Bacteroides bouchesdurhonensis" (DSM 103120, Marseille-P2653)

BacDive ID 160653

Type strain

Culture col. no. DSM 103120 Marseille-P2653

NCBI tax ID(s) 1841855

Special Collections DSMZ Cadoret human gut

Links

"Bacteroides bouchesdurhonensis" DSM 103120 is a mesophilic prokaryote that was isolated from Stool sample from patient.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 397288

DSM 103120

@ref 20215

Last LPSN update 2025-12-16 10:08:32

Domain Pseudomonadati

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Bacteroidaceae

Genus Bacteroides

Species "Bacteroides bouchesdurhonensis"

Full scientific name Bacteroides bouchesdurhonensis Ndongo et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97.7
125438	negative	93.604

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67563	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
67563	FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)		Medium recipe at MediaDive	Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67563	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate anaerobe	97

Spore formation

@ref	Spore formation	Confidence
125439		98.6

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67563	Stool sample from patient	Marseille	France	FRA	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	PRJEB18812 assembly for Bacteroides bouchesdurhonensis Marseille-P2653	scaffold	GCA_900155865	2984898013	1841855	73.23

Genome browser: GCA_900155865

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Bacteroides sp. Marseille-P2653 partial 16S rRNA gene, strain Marseille-P2653	LT558803	1445		1841855

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bacteroides bouchesdurhonensis Marseille-P2653T
NCBI: GCA_900155865

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.60	no
125439	motility	BacteriaNetⓘ	no	73.90	no
125439	gram_stain	BacteriaNetⓘ	negative	97.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	97.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacteroides bouchesdurhonensis Marseille-P2653
NCBI: GCA_900155865.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	93.60	no
125438	anaerobic	anaerobicⓘ	yes	84.93	no
125438	aerobic	aerobicⓘ	no	90.82	no
125438	spore-forming	spore-formingⓘ	no	89.79	no
125438	thermophilic	thermophileⓘ	no	95.66	yes
125438	flagellated	motile2+ⓘ	no	86.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phenotype	Incorporation of polylactic acid microplastics into the carbon cycle as a carbon source to remodel the endogenous metabolism of the gut.	Bao L, Cui X, Zeng T, Liu G, Lai W, Zhao H, Gao F, Wu J, Leong KW, Chen C.	Proc Natl Acad Sci U S A	10.1073/pnas.2417104122	2025
Phylogeny	Identification of disease-specific gut microbial markers in vitiligo.	Dou Y, Niu Y, Shen H, Wang L, Lv Y, Liu S, Xie X, Feng A, Liu X.	Front Microbiol	10.3389/fmicb.2025.1499035	2025
Genetics	Genome sequence and description of Bacteroides bouchesdurhonensis sp. nov., a new anaerobic bacterium isolated from the human gut.	Ndongo S, Tall ML, Ngom II, Fournier PE, Levasseur A, Raoult D, Khelaifia S	New Microbes New Infect	10.1016/j.nmni.2019.100571	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67563	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103120
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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"Bacteroides bouchesdurhonensis" (DSM 103120, Marseille-P2653)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900155865

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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