Name: Streptomyces varsoviensis 13-I
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16065

Type strain:

Species: Streptomyces varsoviensis

Strain Designation: 13-I

Culture col. no.: DSM 40346, ATCC 14631c, ATCC 25505, CBS 357.64, CBS 647.69, CUB 116, DSM 40677, IFO 13093, ISP 5346, JCM 4303, JCM 4523, NBRC 13093, NCIB 9522, RIA 1285, ETH 32679, KCC S-0303, KCC S-0523, BCRC 12647, CGMCC 4.1431, HAMBI 1046, IMET 43351, LMG 19360, MTCC 1537, NCAIM B.01482, NCIMB 9522, NRRL B-3589, NRRL ISP-5346, VKM Ac-1000, AS 4.1431, CCRC 12647

Strain history: KCC S-0523 <-- IFO 13093 <-- SAJ <-- ISP 5346 <-- W. Kury?owicz 13-1.

NCBI tax ID(s): 67373 (species)

SI-ID 92753

LMG 19360, ATCC 25505, CCRC 12647, DSM 40346, IFO 13093, IMET 43351, JCM 4303, JCM 4523, NCIMB 9522, NRRL B-3589, ATCC 14631, NCIB 9522, DSM 40677, VKM Ac-1000, CBS 647.69, CBS 357.64, AS 4.1431, NBRC 13093, BCRC 12647, HAMBI 1046, NCAIM B.01482, CGMCC 4.1431

Other strains from Streptomyces varsoviensis

S. varsoviensis ST028234(HKI), FSU-4159,
S. varsoviensis SF001226(FSU),
S. varsoviensis SF004159(FSU),

Section

Streptomyces varsoviensis 13-I is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces varsoviensis**
	Full Scientific Name (LPSN)	Streptomyces varsoviensis Kurylowicz and Woznicka 1967 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69259]	Colony color	Copper brown (8004)
[Ref.: #69259]	Cultivation medium used	ISP 5

[Ref.: #69259]	Colony color	Brown beige (1011), beige brown (8024)
[Ref.: #69259]	Cultivation medium used	suter with tyrosine

[Ref.: #69259]	Colony color	Brown beige (1011)
[Ref.: #69259]	Cultivation medium used	ISP 4

[Ref.: #69259]	Colony color	Brown beige (1011)
[Ref.: #69259]	Cultivation medium used	suter without tyrosine

[Ref.: #69259]	Colony color	Ochre brown (8001), clay brown (8003)
[Ref.: #69259]	Cultivation medium used	ISP 2

[Ref.: #69259]	Colony color	Olive brown (8008), nut brown (8011)
[Ref.: #69259]	Cultivation medium used	ISP 6

[Ref.: #69259]	Colony color	Sand yellow (1002)
[Ref.: #69259]	Cultivation medium used	ISP 3

[Ref.: #69259]	Colony color	Signal orange (2010)
[Ref.: #69259]	Cultivation medium used	ISP 7

[Ref.: #69259]	Pigment production	yes
[Ref.: #69259]	Pigment name	Melanin
[Ref.: #69259]	Pigment production	yes
[Ref.: #69259]	Pigmentation color	Brown beige (1011), sand yellow (1002), clay brown (8003), ochre brown (8001)
[Ref.: #69259]	Pigment name	soluble pigment

[Ref.: #69259]	Multicellular complex forming ability	no
[Ref.: #69259]	Multicellular complex name	Aerial mycelium
[Ref.: #69259]	Medium Name (multicellularity)	ISP 2

[Ref.: #69259]	Multicellular complex forming ability	no
[Ref.: #69259]	Multicellular complex name	Aerial mycelium
[Ref.: #69259]	Medium Name (multicellularity)	ISP 3

[Ref.: #69259]	Multicellular complex forming ability	no
[Ref.: #69259]	Multicellular complex name	Aerial mycelium
[Ref.: #69259]	Medium Name (multicellularity)	ISP 4

[Ref.: #69259]	Multicellular complex forming ability	no
[Ref.: #69259]	Multicellular complex name	Aerial mycelium
[Ref.: #69259]	Medium Name (multicellularity)	ISP 5

[Ref.: #69259]	Multicellular complex forming ability	no
[Ref.: #69259]	Multicellular complex name	Aerial mycelium
[Ref.: #69259]	Medium Name (multicellularity)	ISP 6

[Ref.: #69259]	Multicellular complex forming ability	no
[Ref.: #69259]	Multicellular complex name	Aerial mycelium
[Ref.: #69259]	Medium Name (multicellularity)	ISP 7

[Ref.: #69259]	Multicellular complex forming ability	no
[Ref.: #69259]	Multicellular complex name	Aerial mycelium
[Ref.: #69259]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69259]	Multicellular complex forming ability	no
[Ref.: #69259]	Multicellular complex name	Aerial mycelium
[Ref.: #69259]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #9474]

Caption:

Medium 65 28°C

[Ref.: #9474]

Intellectual property rights:

[Ref.: #69259]

Caption:

(ISP6, ISP7, SSM+T, SSM-T)

[Ref.: #69259]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69259]

Caption:

(ISP6, ISP7, SSM+T, SSM-T)

[Ref.: #69259]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9474]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9474]

Culture medium growth

[Ref.: #9474]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9474]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9474]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9474]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #9474]	Name of produced compound	oxytetracycline
[Ref.: #20216]	Name of produced compound	Oxytetracycline

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69259]		NaCl		growth	0-7.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69259]	arabinose ChEBI	+/-	growth
[Ref.: #69259]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69259]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69259]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69259]	inositol ChEBI	-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69259]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69259]	raffinose ChEBI	-	growth
[Ref.: #69259]	rhamnose ChEBI	+/-	growth
[Ref.: #69259]	sucrose ChEBI	-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69259]	xylose ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #67770]		oxytetracycline ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne, API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69259]	3753	-	-	-	+	-	-	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69259]	5937	not determinedn.d.	+	+	+	-	+	+/-	-	-	-	+	+	-	-	-	-	-	-	+/-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	4-hydroxymandelate degradation	100	9 of 9
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	cyanate degradation	100	3 of 3
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	aminopropanol phosphate biosynthesis	100	2 of 2
[Ref.: #66794]	butanoate fermentation	100	4 of 4
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	hydrogen production	100	5 of 5
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	isoleucine metabolism	100	8 of 8
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	CO2 fixation in Crenarchaeota	100	9 of 9
[Ref.: #66794]	tetrahydrofolate metabolism	92.86	13 of 14
[Ref.: #66794]	heme metabolism	92.86	13 of 14
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	proline metabolism	90.91	10 of 11
[Ref.: #66794]	phenol degradation	90	18 of 20
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	myo-inositol biosynthesis	90	9 of 10
[Ref.: #66794]	tryptophan metabolism	89.47	34 of 38
[Ref.: #66794]	glutamate and glutamine metabolism	89.29	25 of 28
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	87.5	7 of 8
[Ref.: #66794]	alanine metabolism	86.21	25 of 29
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	citric acid cycle	85.71	12 of 14
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	purine metabolism	82.98	78 of 94
[Ref.: #66794]	vitamin B12 metabolism	82.35	28 of 34
[Ref.: #66794]	glycolysis	82.35	14 of 17
[Ref.: #66794]	3-chlorocatechol degradation	80	4 of 5
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	3-phenylpropionate degradation	80	12 of 15
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	80	8 of 10
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	NAD metabolism	77.78	14 of 18
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	allantoin degradation	77.78	7 of 9
[Ref.: #66794]	urea cycle	76.92	10 of 13
[Ref.: #66794]	pyrimidine metabolism	75.56	34 of 45
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	cyclohexanol degradation	75	3 of 4
[Ref.: #66794]	arginine metabolism	75	18 of 24
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	75	9 of 12
[Ref.: #66794]	metabolism of disaccharids	72.73	8 of 11
[Ref.: #66794]	oxidative phosphorylation	72.53	66 of 91
[Ref.: #66794]	histidine metabolism	72.41	21 of 29
[Ref.: #66794]	degradation of hexoses	72.22	13 of 18
[Ref.: #66794]	degradation of sugar acids	72	18 of 25
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	aclacinomycin biosynthesis	71.43	5 of 7
[Ref.: #66794]	non-pathway related	71.05	27 of 38
[Ref.: #66794]	lipid metabolism	70.97	22 of 31
[Ref.: #66794]	methionine metabolism	69.23	18 of 26
[Ref.: #66794]	androgen and estrogen metabolism	68.75	11 of 16
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	daunorubicin biosynthesis	66.67	6 of 9
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	66.67	4 of 6
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	tyrosine metabolism	64.29	9 of 14
[Ref.: #66794]	cholesterol biosynthesis	63.64	7 of 11
[Ref.: #66794]	carnitine metabolism	62.5	5 of 8
[Ref.: #66794]	lysine metabolism	61.9	26 of 42
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	glycine metabolism	60	6 of 10
[Ref.: #66794]	vitamin K metabolism	60	3 of 5
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	benzoyl-CoA degradation	57.14	4 of 7
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	53.85	7 of 13
[Ref.: #66794]	degradation of pentoses	50	14 of 28
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	chlorophyll metabolism	50	9 of 18
[Ref.: #66794]	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	isoprenoid biosynthesis	50	13 of 26
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	vitamin E metabolism	50	2 of 4
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	carotenoid biosynthesis	45.45	10 of 22
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	polyamine pathway	43.48	10 of 23
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	D-cycloserine biosynthesis	40	2 of 5
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	methanogenesis from CO2	33.33	4 of 12
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	arachidonic acid metabolism	22.22	4 of 18
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9474]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9474]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces varsoviensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4523	D44211	121	ENA	67373 tax ID	*
[Ref.: #20218]	Streptomyces varsoviensis gene for 16S rRNA, partial sequence, strain: NBRC 13093	AB184306	1475	ENA	67373 tax ID	*
[Ref.: #20218]	Streptomyces varsoviensis strain NRRL B-3589 16S ribosomal RNA gene, partial sequence	DQ026653	1499	ENA	67373 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces varsoviensis NRRL ISP-5346	GCA_000718635	contig	GenBank	67373 tax ID
[Ref.: #67770]	Streptomyces varsoviensis NRRL B-3589	GCA_000719255	contig	GenBank	67373 tax ID
[Ref.: #67770]	Streptomyces varsoviensis NRRL B-3589	GCA_001270595	contig	GenBank	67373 tax ID

[Ref.: #67770]

GC-content

72.4 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces varsoviensis NRRL ISP-5346 NCBI: GCA_000718635.1
[Ref.: #69480]	motile	no	93.835	no
[Ref.: #69480]	flagellated	no	98.484	no
[Ref.: #69480]	gram-positive	yes	88.926	no
[Ref.: #69480]	anaerobic	no	98.94	no
[Ref.: #69480]	halophile	no	90.22	no
[Ref.: #69480]	spore-forming	yes	95.022	no
[Ref.: #69480]	thermophile	no	98.464	no
[Ref.: #69480]	glucose-util	yes	91.849	yes
[Ref.: #69480]	aerobic	yes	92.534	no
[Ref.: #69480]	glucose-ferment	no	90.985	yes

Availability in culture collections External links

[Ref.: #9474]

Culture collection no.

DSM 40346, ATCC 14631c, ATCC 25505, CBS 357.64, CBS 647.69, CUB 116, DSM 40677, IFO 13093, ISP 5346, JCM 4303, JCM 4523, NBRC 13093, NCIB 9522, RIA 1285, ETH 32679, KCC S-0303, KCC S-0523, BCRC 12647, CGMCC 4.1431, HAMBI 1046, IMET 43351, LMG 19360, MTCC 1537, NCAIM B.01482, NCIMB 9522, NRRL B-3589, NRRL ISP-5346, VKM Ac-1000, AS 4.1431, CCRC 12647

[Ref.: #85136]

SI-ID 92753

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces zagrosensis sp. nov., isolated from soil.	Mohammadipanah F, Hamedi J, Sproer C, Rohde M, Montero-Calasanz MDC, Klenk HP	Int J Syst Evol Microbiol	10.1099/ijs.0.064527-0	2014	*
Genetics	Draft genome sequence of Streptomyces tunisialbus DSM 105760(T).	Ayed A, Wibberg D, Zendah El Euch I, Frese M, Limam F, Sewald N	Arch Microbiol	10.1007/s00203-020-01913-z	2020	*
Pathogenicity	Persipeptides A and B, two cyclic peptides from Streptomyces sp. UTMC 1154.	Mohammadipanah F, Matasyoh J, Hamedi J, Klenk HP, Laatsch H	Bioorg Med Chem	10.1016/j.bmc.2011.10.076	2011	*
	Phenylacetyl pepstatin inhibitors of aspartyl proteases from Streptomyces varsoviensis.	Ye W, Guo Z	J Antibiot (Tokyo)	10.1038/s41429-022-00542-6	2022	*

References

#9474

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40346

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69259

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#85136

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92753.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces varsoviensis NRRL ISP-5346

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