Name: Streptomyces griseoincarnatus DSM 40179
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16064

Type strain:

Species: Streptomyces griseoincarnatus

Culture col. no.: DSM 40179, ATCC 19815, ATCC 19930, CBS 568.68, IFO 12825, INA 5557/54, ISP 5179, NBRC 12825, RIA 1095, JCM 4422, BCRC 11488, CGMCC 4.1778, IMET 42059, NRRL B-3984, VKM Ac-1854

Strain history: KCC S-0422 <-- IFO 12825 <-- SAJ <-- ISP 5179 <-- T. P. Preobrazhenskaya INA 5557/54.

NCBI tax ID(s): 67372 (species)

Other strains from Streptomyces griseoincarnatus

S. griseoincarnatus DSM 40274, ATCC 23623, ATCC 23917, ... (type strain)
S. griseoincarnatus STI10664(IMET), SN 588
S. griseoincarnatus

Section

Streptomyces griseoincarnatus DSM 40179 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil in hot climate.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces griseoincarnatus**
	Full Scientific Name (LPSN)	Streptomyces griseoincarnatus (Preobrazhenskaya et al. 1957) Pridham et al. 1958 (Approved Lists 1980)

	Synonym	"Actinomyces* variabilis"*
	Synonym	Streptomyces erythrogriseus
	Synonym	"Actinomyces* griseoincarnatus"*
	Synonym	Streptomyces variabilis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9372]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9372]

Culture medium growth

[Ref.: #9372]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9372]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9372]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9372]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9372]	Sample type/isolated from	soil in hot climate

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Climate	#Hot	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ442551 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples
Soil Samples	30
Animal Samples	18
Plant Samples	2
Total Samples	50

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9372]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces variabilis gene for 16S rRNA, partial sequence	AB122723	565	ENA	67372 tax ID	*
[Ref.: #20218]	Streptomyces variabilis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4422	D44134	121	ENA	67372 tax ID	*
[Ref.: #20218]	Streptomyces variabilis gene for 16S rRNA, partial sequence, strain: NBRC 12825	AB184884	1479	ENA	67372 tax ID	*
[Ref.: #20218]	Streptomyces variabilis strain NRRL B-3984T 16S ribosomal RNA gene, partial sequence	DQ442551	1499	ENA	67372 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces variabilis JCM 4422	GCA_014649935	scaffold	GenBank	67372 tax ID
[Ref.: #66792]	Streptomyces variabilis strain JCM 4422	67372.4	wgs	PATRIC	67372 tax ID	*

[Ref.: #67770]

GC-content

72.4 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces variabilis strain JCM 4422 PATRIC: 67372.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces variabilis strain JCM 4422 PATRIC: 67372.4
[Ref.: #69480]	gram-positive	yes	91.969	no
[Ref.: #69480]	anaerobic	no	98.998	no
[Ref.: #69480]	halophile	no	89.592	no
[Ref.: #69480]	spore-forming	yes	95.346	no
[Ref.: #69480]	glucose-util	yes	88.078	no
[Ref.: #69480]	thermophile	no	98.671	no
[Ref.: #69480]	flagellated	no	97.232	no
[Ref.: #69480]	motile	no	94.568	no
[Ref.: #69480]	aerobic	yes	94.37	no
[Ref.: #69480]	glucose-ferment	no	87.216	no

Availability in culture collections External links

[Ref.: #9372]

Culture collection no.

DSM 40179, ATCC 19815, ATCC 19930, CBS 568.68, IFO 12825, INA 5557/54, ISP 5179, NBRC 12825, RIA 1095, JCM 4422, BCRC 11488, CGMCC 4.1778, IMET 42059, NRRL B-3984, VKM Ac-1854

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces euryhalinus sp. nov., a new actinomycete isolated from a mangrove forest.	Biswas K, Choudhury JD, Mahansaria R, Saha M, Mukherjee J	J Antibiot (Tokyo)	10.1038/ja.2017.3	2017	*

References

#9372

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40179

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Streptomyces variabilis strain JCM 4422

Streptomyces variabilis strain JCM 4422

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