Streptomyces griseoincarnatus (DSM 40179, ATCC 19815, ATCC 19930)

Name: Streptomyces griseoincarnatus (DSM 40179, ATCC 19815, ATCC 19930)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16064

Type strain

Culture col. no. DSM 40179 ATCC 19815 ATCC 19930 CBS 568.68 IFO 12825 10 more

NCBI tax ID(s) 67372

Special Collections DSMZ JCM

Links

Streptomyces griseoincarnatus DSM 40179 is a mesophilic prokaryote that was isolated from soil in hot climate.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 389360

ATCC 19930,ATCC 19815,IFO 12825,DSM 40179,JCM 4422,CCRC 11488,IMET 42059,NRRL B-3984,VKM Ac-1854,NBRC 12825,BCRC 11488,CGMCC 4.1778,LMG 20270,CBS 568.68

@ref 20215

Last LPSN update 2025-12-16 09:50:45

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces griseoincarnatus

Full scientific name Streptomyces griseoincarnatus (Preobrazhenskaya et al. 1957) Pridham et al. 1958 (Approved Lists 1980)

Synonyms (4)

"Actinomyces variabilis"
"Actinomyces griseoincarnatus"
Streptomyces variabilis
Streptomyces erythrogriseus

BacDive ID	Other strains from **Streptomyces griseoincarnatus** (3)	Type strain
15267	S. griseoincarnatus DSM 40274, ATCC 23623, ATCC 23917, CBS 838.68, ... (type strain)
128387	S. griseoincarnatus STI10664(IMET), SN 588
128388	S. griseoincarnatus

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.8

Multimedia

@ref:	9372
multimedia content:	DSM_40179.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_40179.jpg
caption:	Medium 65 28°C
intellectual property rights:	Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
9372	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9372	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 20.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l NaCl 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water
9372	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9372	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.5

Spore formation

@ref	Spore formation	Confidence
125438		93.007
125439		90.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Climate	#Hot	-

Isolation

@ref	Sample type
9372	soil in hot climate
67770	Soil

Taxonmaps

69479

Global distribution of 16S sequence DQ442551 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples
Soil Samples	30
Animal Samples	18
Plant Samples	2
Total Samples	50

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9372	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1464993v1 assembly for Streptomyces variabilis JCM 4422	scaffold	GCA_014649935	67372.4	8109520177	67372	50.9

Genome browser: GCA_014649935

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces variabilis gene for 16S rRNA, partial sequence	AB122723	565	67372
20218	Streptomyces variabilis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4422	D44134	121	67372
20218	Streptomyces variabilis gene for 16S rRNA, partial sequence, strain: NBRC 12825	AB184884	1479	67372
20218	Streptomyces variabilis strain NRRL B-3984T 16S ribosomal RNA gene, partial sequence	DQ442551	1499	67372
124043	Streptomyces variabilis strain NBRC 12825 16S ribosomal RNA gene, partial sequence.	MW680902	1479	67372
124043	Streptomyces variabilis strain JCM 4422 16S ribosomal RNA gene, partial sequence.	MT760548	1373	67372

GC content

@ref	GC-content (mol%)	Method
67770	72.4	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces variabilis JCM 4422
NCBI: GCA_014649935

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	90.20	no
125439	motility	BacteriaNetⓘ	no	89.90	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces variabilis strain JCM 4422
PATRIC: 67372.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.93	no
125438	anaerobic	anaerobicⓘ	no	97.32	no
125438	spore-forming	spore-formingⓘ	yes	93.01	no
125438	aerobic	aerobicⓘ	yes	84.81	no
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Whole genome sequencing of a novel chitinolytic Streptomyces sp. RB7AG reveals it's chitosan production potential: optimization of the process through Taguchi experimental design.	Behera SS, Nivedita S, Das S, Behera HT, Mojumdar A, Ray L.	3 Biotech	10.1007/s13205-023-03613-z	2023
	Utilizing actinobacteria for glyphosate biodegradation: innovative solutions for sustainable agricultural soil remediation.	Rebai H, Lefaida C, Sholkamy EN, Pratheesh PT, Hassan AA, Tazdait D, Citarasu T, Boudemagh A.	Braz J Microbiol	10.1007/s42770-025-01655-4	2025
Phylogeny	Reclassification of 15 Streptomyces species as synonyms of Streptomyces albogriseolus, Streptomyces althioticus, Streptomyces anthocyanicus, Streptomyces calvus, Streptomyces griseoincarnatus, Streptomyces mutabilis, Streptomyces pilosus or Streptomyces rochei.	Komaki H.	Int J Syst Evol Microbiol	10.1099/ijsem.0.004718	2019
Phylogeny	Streptomyces tunisiensis sp. nov., a novel Streptomyces species with antibacterial activity.	Slama N, Mankai H, Ayed A, Mezhoud K, Rauch C, Lazim H, Barkallah I, Gtari M, Limam F.	Antonie Van Leeuwenhoek	10.1007/s10482-013-0086-z	2014
Phylogeny	Streptomyces wuyuanensis sp. nov., an actinomycete from soil.	Zhang X, Zhang J, Zheng J, Xin D, Xin Y, Pang H.	Int J Syst Evol Microbiol	10.1099/ijs.0.047050-0	2013
Phylogeny	Streptomyces euryhalinus sp. nov., a new actinomycete isolated from a mangrove forest.	Biswas K, Choudhury JD, Mahansaria R, Saha M, Mukherjee J	J Antibiot (Tokyo)	10.1038/ja.2017.3	2017

References

#9372	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40179
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces griseoincarnatus (DSM 40179, ATCC 19815, ATCC 19930)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014649935

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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