Spirosoma endbachense (DSM 111055, KCTC 72613, I24)

Name: Spirosoma endbachense (DSM 111055, KCTC 72613, I24)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160629

Type strain

Strain Designation I24, I-24

Culture col. no. DSM 111055 KCTC 72613 I24 I-24

NCBI tax ID(s) 2666025

Special Collections DSMZ KCTC

Links

Spirosoma endbachense I24 is a mesophilic prokaryote that was isolated from Soil at natural salt meadow.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 396707

KCTC 72613,DSM 111055

@ref 20215

Last LPSN update 2025-12-16 10:08:32

Domain Pseudomonadati

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Spirosomataceae

Genus Spirosoma

Species Spirosoma endbachense

Full scientific name Spirosoma endbachense Rojas et al. 2021

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.3

Multimedia

@ref:	67537
multimedia content:	DSM_111055.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_111055.jpg
caption:	Microgrpah of DSM 111055. Scale bar represents 2 um.
intellectual property rights:	Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
manual_annotation:	1

@ref:	67537
multimedia content:	DSM_111055-1.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_111055-1.jpg
caption:	Micrograph of DSM 111055. Scale bar represents 20 um.
intellectual property rights:	Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67537	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67537	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.9

Spore formation

@ref	Spore formation	Confidence
125439		97

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
67537	Soil at natural salt meadow	Bad Endbach Hessen Germany	Germany	DEU	Europe	50.7653	8.4448 50.7653/8.4448

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1023358v1 assembly for Spirosoma endbachense I-24	chromosome	GCA_010233585	2666025.3	2911130114	2666025	49.29

Genome browser: GCA_010233585

GC content

@ref	GC-content (mol%)	Method
67537	47.7	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Spirosoma endbachense I-24
IMG: 2911130114

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.00	no
125439	motility	BacteriaNetⓘ	no	58.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.90	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Spirosoma endbachense sp. nov., isolated from a natural salt meadow.	Rojas J, Ambika Manirajan B, Ratering S, Suarez C, Geissler-Plaum R, Schnell S	Int J Syst Evol Microbiol	10.1099/ijsem.0.004601	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67537	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111055
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Spirosoma endbachense (DSM 111055, KCTC 72613, I24)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_010233585

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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