Caenibius estronivorus (DSM 25986, CCTCC AB 2012025, MH-B5)

Name: Caenibius estronivorus (DSM 25986, CCTCC AB 2012025, MH-B5)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160549

Type strain

Strain Designation MH-B5

Culture col. no. DSM 25986 CCTCC AB 2012025 MH-B5

NCBI tax ID(s) 1172626

Special Collections DSMZ

Links

Caenibius estronivorus MH-B5 is a mesophilic prokaryote that was isolated from Yundang Lake water.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 399552

DSM 25986

@ref 20215

Last LPSN update 2025-12-16 10:08:31

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Erythrobacteraceae

Genus Caenibius

Species Caenibius estronivorus

Full scientific name Caenibius estronivorus (Qin et al. 2021) Wang et al. 2025

Synonyms (2)

Altererythrobacter estronivorus
Croceicoccus estronivorus

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.8
125438	negative	94.733

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67457	ALTERYTHROBACTER MEDIUM 216L (DSMZ Medium 1453)		Medium recipe at MediaDive	Name: ALTERYTHROBACTER MEDIUM 216L (DSMZ Medium 1453) Composition: Agar 12.0 g/l Tryptone 10.0 g/l Yeast extract 2.0 g/l Sodium acetate 1.0 g/l Sodium citrate 0.5 g/l NH4NO3 0.2 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67457	positive	growth	35	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	95

Spore formation

@ref	Spore formation	Confidence
125439		97.3
125438		93.096

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67457	Yundang Lake water	Xiamen Bay	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence JQ723700 (>99% sequence identity) for Altererythrobacter estronivorus subclade from Microbeatlas

Aquatic Samples	163
Soil Samples	492
Animal Samples	39
Plant Samples	46
Total Samples	740

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM162532v1 assembly for Croceicoccus estronivorus MH-B5	contig	GCA_001625325	1172626.4	2671180971	1172626	64.59

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67457	Croceicoccus estronivorus 16S ribosomal RNA gene, partial sequence	JQ723700	1456		1172626

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Croceicoccus estronivorus MH-B5
NCBI: GCA_001625325

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.30	no
125439	motility	BacteriaNetⓘ	yes	78.20	no
125439	gram_stain	BacteriaNetⓘ	negative	98.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	95.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Croceicoccus estronivorus MH-B5
NCBI: GCA_001625325.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	94.73	no
125438	anaerobic	anaerobicⓘ	no	90.87	no
125438	aerobic	aerobicⓘ	yes	86.63	no
125438	spore-forming	spore-formingⓘ	no	93.10	no
125438	thermophilic	thermophileⓘ	no	95.53	yes
125438	flagellated	motile2+ⓘ	yes	67.93	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Altererythrobacter spongiae sp. nov., a novel member of the genus Altererythrobacter isolated from marine sponge.	Zhuang L, Lin B, Chen D, Li G, Zhang B, Luo L	Int J Syst Evol Microbiol	10.1099/ijsem.0.003423	2019
Phylogeny	Altererythrobacter estronivorus sp. nov., an Estrogen-Degrading Strain Isolated from Yundang Lagoon of Xiamen City in China.	Qin D, Ma C, Hu A, Zhang F, Hu H, Yu CP	Curr Microbiol	10.1007/s00284-016-0995-y	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67457	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25986
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Caenibius estronivorus (DSM 25986, CCTCC AB 2012025, MH-B5)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001625325

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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