Name: Methanohalophilus profundi SLHTYRO
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160492

Type strain:

Species: Methanohalophilus profundi

Strain Designation: SLHTYRO

Culture col. no.: DSM 108854, JCM 32768, UBOCC M-3308

Strain history: S. L'Haridon; Univ. of Brest, France; SLHTYRO.

NCBI tax ID(s): 2138083 (species)

Section

Methanohalophilus profundi SLHTYRO is a mesophilic archaeon that was isolated from brine sample from deep hypersaline anoxic lake.

mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	"Euryarchaeota"
	Class	"Methanomicrobia"
	Order	*Methanosarcinales*
	Family	*Methanosarcinaceae*
	Genus	*Methanohalophilus*
	Species	**Methanohalophilus profundi**
	Full Scientific Name (PNU)	Methanohalophilus profundi L'Haridon et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #69480]

Gram stain

negative Confidence in %99.993

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67400]

Culture medium

METHANOHALOPHILUS PROFUNDI MEDIUM (DSMZ Medium 479a)

[Ref.: #67400]

Culture medium growth

[Ref.: #67400]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #67400]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67400]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #67400]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %99.533

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.979
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67400]	Sample type/isolated from	brine sample from deep hypersaline anoxic lake
[Ref.: #67400]	Geographic location (country and/or sea, region)	Deep sea hypersaline Lake TYRO
[Ref.: #67400]	Country	Greece
[Ref.: #67400]	Country ISO 3 Code	GRC
[Ref.: #67400]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Deep hypersaline anoxic basin ("Tyro") located in the Eastern Mediterranean Sea
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Methanohalophilus sp. SLHTYRO 16S ribosomal RNA gene, partial sequence	MH223463	896	ENA	2138083 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Methanohalophilus profundi SLHTYRO	GCA_004137855	scaffold	GenBank	2138083 tax ID

[Ref.: #67400]	GC-content	42.7 mol%	sequence analysis
[Ref.: #67770]	GC-content	42.7 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methanohalophilus profundi SLHTYRO NCBI: GCA_004137855.1
[Ref.: #69480]	anaerobic	yes	99.533	no
[Ref.: #69480]	gram-positive	no	99.993	no
[Ref.: #69480]	spore-forming	no	99.979	yes
[Ref.: #69480]	thermophile	no	95.546	yes
[Ref.: #69480]	motile	no	78.257	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Methanohalophilus profundi SLHTYRO NCBI: GCA_004137855.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #67400]

Culture collection no.

DSM 108854, JCM 32768, UBOCC M-3308

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methanohalophilus profundi sp. nov., a methylotrophic halophilic piezophilic methanogen isolated from a deep hypersaline anoxic basin.	L'Haridon S, Haroun H, Corre E, Roussel E, Chalopin M, Pignet P, Baliere C, la Cono V, Jebbar M, Yakimov M, Toffin L	Syst Appl Microbiol	10.1016/j.syapm.2020.126107	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67400

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108854

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Methanohalophilus profundi in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF