Corynebacterium kalinowskii (DSM 110639, LMG 31801, 1959)

Name: Corynebacterium kalinowskii (DSM 110639, LMG 31801, 1959)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160490

Type strain

Strain Designation 1959

Culture col. no. DSM 110639 LMG 31801 1959

NCBI tax ID(s) 2675216

Special Collections DSMZ

History DSMZ <- C. Rückert, CeBiTec; 1959 <- M. Ruwe, CeBiTec; 1959

Links

Corynebacterium kalinowskii 1959 is a bacterium that was isolated from soil of a paddock.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 407906

LMG 31801,DSM 110639

@ref 20215

Last LPSN update 2026-05-29 08:44:27

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium kalinowskii

Full scientific name Corynebacterium kalinowskii Schaffert et al. 2021

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	91.838

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67398	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
67398	positive	growth	28

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		94.672

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
67398	soil of a paddock	Vilsendorf (52° 04' 53.2" N, 8° 32' 48.7" E)	Germany	DEU	Europe	52.0814	8.5469 52.0814/8.5469

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM973438v1 assembly for Corynebacterium kalinowskii 1959	complete	GCA_009734385	2675216.3	3004725780	2675216	99.06

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67398	Corynebacterium kalinowskii strain 1959 16S ribosomal RNA gene, partial sequence	MN714228	1505		2675216

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM973438v1 assembly for Corynebacterium kalinowskii 1959
NCBI: GCA_009734385

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	78.83	no
125439	gram_stain	BacteriaNetⓘ	positive	70.74	no
125439	motility	BacteriaNetⓘ	no	89.87	no
125439	spore_formation	BacteriaNetⓘ	no	94.67	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium kalinowskii 1959
NCBI: GCA_009734385.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.84	no
125438	anaerobic	anaerobicⓘ	no	92.39	no
125438	aerobic	aerobicⓘ	yes	53.33	no
125438	spore-forming	spore-formingⓘ	no	73.94	no
125438	thermophilic	thermophileⓘ	no	95.08	no
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Classification of three corynebacterial strains isolated from a small paddock in North Rhine-Westphalia: proposal of Corynebacterium kalinowskii sp. nov., Corynebacterium comes sp. nov. and Corynebacterium occultum sp. nov.	Schaffert L, Ruwe M, Milse J, Hanuschka K, Ortseifen V, Droste J, Brandt D, Schluter L, Kutter Y, Vinke S, Viehofer P, Jacob L, Lubke NC, Schulte-Berndt E, Hain C, Linder M, Schmidt P, Wollenschlager L, Luttermann T, Thieme E, Hassa J, Haak M, Wittchen M, Mentz A, Persicke M, Busche T, Ruckert C	Int J Syst Evol Microbiol	10.1099/ijsem.0.004933	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67398	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110639
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Corynebacterium kalinowskii (DSM 110639, LMG 31801, 1959)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_009734385

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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