Name: Gimesia fumaroli Enrichment17
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160477

Type strain:

Species: Gimesia fumaroli

Strain Designation: Enrichment17, Enr17

Culture col. no.: DSM 100710, VKM B-3429

Strain history: <- M. Jogler, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; Enrichment 17 <- A. Stieler

NCBI tax ID(s): 2527976 (species)

SI-ID 406558

DSM 100710

Section

Gimesia fumaroli Enrichment17 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from marine hot lake gas escape .

Gram-negative
other
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Planctomycetota*
	Class	*Planctomycetia*
	Order	*Planctomycetales*
	Family	*Planctomycetaceae*
	Genus	*Gimesia*
	Species	**Gimesia fumaroli**
	Full Scientific Name (LPSN)	Gimesia fumaroli Wiegand et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #68358]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.928

[Ref.: #68358]	Cell length	1.6-2.2 µm

[Ref.: #68358]	Cell width	1.1-1.5 µm

[Ref.: #68358]	Cell shape	other

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Colony color

white

Multimedia content

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Caption:

Micrograph of Gimesia fumaroli DSM100710. Scale bar represents 5µm.

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Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

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Culture medium

PLANCTOMYCES MEDIUM (DSMZ Medium 1560)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #67385]	growth	28 °C
[Ref.: #68358]	growth	10-30 °C
[Ref.: #68358]	optimum	27 °C

[Ref.: #67385]	Temperature range	mesophilic
[Ref.: #68358]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68358]			optimum	6.5
[Ref.: #68358]			growth	6-9.5

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #68358]	Observation	form rosettes which assemble into loose aggregates
[Ref.: #68358]	Observation	Cells have crateriform structures covering the entire cell surface and a stalk (usually about the length of the cell) opposite of the budding pole
[Ref.: #68358]	Observation	divide by budding, with the released buds having the same shape as the mother cells

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68358]

Fatty acid	Percentage
C16:1 w7c/C15 iso 2OH/C16:1 w6c	42.09
C16:0	32.08
C18:1 w7c	7.51
C17:0	3.32
C15:0	3.02
C18:1 w9c	2.62
C17:1 w6c	2.18
C16:0 10-methyl	2.02
C17:1 w8c	1.9
C15:1 w6c	1.04
C18:0	0.85
C12:0 3OH	0.57
C14:0	0.3
C14:0 3OH/iso-C16:1 I	0.26
C16:1 w5c	0.23

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67385]	Sample type/isolated from	marine hot lake gas escape (09_05_HL_M_05)
[Ref.: #67385]	Geographic location (country and/or sea, region)	marine hot lake gas escape at Panarea island
[Ref.: #67385]	Country	Italy
[Ref.: #67385]	Country ISO 3 Code	ITA
[Ref.: #67385]	Continent	Europe

[Ref.: #68358]	Sample type/isolated from	marine hot lake gas escape
[Ref.: #68358]	Geographic location (country and/or sea, region)	Panarea island
[Ref.: #68358]	Country	Italy
[Ref.: #68358]	Country ISO 3 Code	ITA
[Ref.: #68358]	Continent	Europe
[Ref.: #68358]	Enrichment culture	M1H NAG ASW medium
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67385]	Planctomycetes bacterium strain Enr17 16S ribosomal RNA gene, partial sequence	MK554524	1540	ENA	2527976 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68358]	Gimesia fumaroli Enr17	GCA_007754425	chromosome	GenBank	2527976 tax ID

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GC-content

49.5 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gimesia fumaroli Enr17 NCBI: GCA_007754425.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gimesia fumaroli Enr17 NCBI: GCA_007754425.1
[Ref.: #69480]	flagellated	no	67.988	no
[Ref.: #69480]	gram-positive	no	98.314	yes
[Ref.: #69480]	anaerobic	no	96.006	no
[Ref.: #69480]	aerobic	yes	83.324	yes
[Ref.: #69480]	halophile	no	75.367	no
[Ref.: #69480]	spore-forming	no	89.124	no
[Ref.: #69480]	glucose-util	yes	84.491	no
[Ref.: #69480]	thermophile	no	90.187	no
[Ref.: #69480]	motile	yes	86.716	no
[Ref.: #69480]	glucose-ferment	no	88.645	no

Availability in culture collections External links

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Culture collection no.

DSM 100710, VKM B-3429

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SI-ID 406558

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Additions to the genus Gimesia: description of Gimesia alba sp. nov., Gimesia algae sp. nov., Gimesia aquarii sp. nov., Gimesia aquatilis sp. nov., Gimesia fumaroli sp. nov. and Gimesia panareensis sp. nov., isolated from aquatic habitats of the Northern Hemisphere.	Wiegand S, Jogler M, Boedeker C, Heuer A, Rast P, Peeters SH, Jetten MSM, Kaster AK, Rohde M, Kallscheuer N, Jogler C	Antonie Van Leeuwenhoek	10.1007/s10482-020-01489-0	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67385

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100710

#68358

Sandra Wiegand, Mareike Jogler, Christian Boedeker, Anja Heuer, Patrick Rast, Stijn H. Peeters, Mike S. M. Jetten, Anne-Kristin Kaster, Manfred Rohde, Nicolai Kallscheuer & Christian Jogler: Additions to the genus Gimesia: description of Gimesia alba sp. nov., Gimesia algae sp. nov., Gimesia aquarii sp. nov., Gimesia aquatilis sp. nov., Gimesia fumaroli sp. nov. and Gimesia panareensis sp. nov., isolated from aquatic habitats of the Northern Hemisphere. Antonie Van Leeuwenhoek 113: 1999 - 2018 2020 ( DOI 10.1007/s10482-020-01489-0 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112721

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406558.1 )

* These data were automatically processed and therefore are not curated

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Gimesia fumaroli Enr17

Gimesia fumaroli Enr17

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