Methanolobus halotolerans (DSM 107642, NBRC 113166, BCRC AR10051)

Name: Methanolobus halotolerans (DSM 107642, NBRC 113166, BCRC AR10051)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160371

Type strain

Strain Designation SY-01

Culture col. no. DSM 107642 NBRC 113166 BCRC AR10051 SY-01

NCBI tax ID(s) 2052935

Special Collections DSMZ

History DSMZ <- M.-C. Lai, National Chung Hsing University, Taichung, Taiwan; SY-01 <- Y. Shen; {2016}

Links

Methanolobus halotolerans SY-01 is an archaeon that was isolated from Sediment.

genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 399786

NBRC 113166,DSM 107642

@ref 20215

Last LPSN update 2026-05-29 08:44:25

Domain Archaea

Phylum Methanobacteriota

Class Methanosarcinia

Order Methanosarcinales

Family Methanosarcinaceae

Genus Methanolobus

Species Methanolobus halotolerans

Full scientific name Methanolobus halotolerans Shen et al. 2020

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67277	METHANOLOBUS MEDIUM (DSMZ Medium 120d)		Medium recipe at MediaDive	Name: METHANOLOBUS MEDIUM (DSMZ Medium 120d) Composition: NaCl 22.4609 g/l Methanol 15.4688 g/l MgCl2 x 6 H2O 9.76562 g/l Na2CO3 0.976562 g/l NH4Cl 0.488281 g/l K2HPO4 0.341797 g/l Na2S x 9 H2O 0.292969 g/l L-Cysteine HCl x H2O 0.292969 g/l KH2PO4 0.224609 g/l CaCl2 x 2 H2O 0.146484 g/l HCl 0.00244141 g/l FeSO4 x 7 H2O 0.00195312 g/l FeCl2 x 4 H2O 0.00146484 g/l Sodium resazurin 0.000488281 g/l CoCl2 x 6 H2O 0.000185547 g/l Pyridoxine hydrochloride 9.76563e-05 g/l MnCl2 x 4 H2O 9.76563e-05 g/l ZnCl2 6.83594e-05 g/l p-Aminobenzoic acid 4.88281e-05 g/l Calcium D-(+)-pantothenate 4.88281e-05 g/l Nicotinic acid 4.88281e-05 g/l Riboflavin 4.88281e-05 g/l Thiamine HCl 4.88281e-05 g/l (DL)-alpha-Lipoic acid 4.88281e-05 g/l Na2MoO4 x 2 H2O 3.51562e-05 g/l NiCl2 x 6 H2O 2.34375e-05 g/l Folic acid 1.95312e-05 g/l Biotin 1.95312e-05 g/l H3BO3 5.85938e-06 g/l CuCl2 x 2 H2O 1.95313e-06 g/l Vitamin B12 9.76563e-07 g/l Distilled water H2SO4

Culture temp

@ref	Growth	Type	Temperature (°C)
67277	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate anaerobe	94.01

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67277	Sediment	Lake Tus, Republic of Khakassia, Russian Federation	Russia	RUS	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM474542v1 assembly for Methanolobus halotolerans SY-01	contig	GCA_004745425	2052935.3	2052935	55.23

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67277	Methanolobus halotolerans strain SY-01 16S ribosomal RNA gene, partial sequence	MG437307	1405		2052935

GC content

@ref	GC-content (mol%)	Method
67277	43.6	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM474542v1 assembly for Methanolobus halotolerans SY-01
NCBI: GCA_004745425

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	94.01	no
125439	gram_stain	BacteriaNetⓘ	negative	43.66	no
125439	motility	BacteriaNetⓘ	no	78.84	no
125439	spore_formation	BacteriaNetⓘ	no	89.34	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Methanolobus halotolerans SY-01
NCBI: GCA_004745425.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	63.35	no
125438	anaerobic	anaerobicⓘ	yes	87.76	no
125438	aerobic	aerobicⓘ	no	89.63	no
125438	spore-forming	spore-formingⓘ	no	86.08	no
125438	thermophilic	thermophileⓘ	no	77.62	yes
125438	flagellated	motile2+ⓘ	no	85.54	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methanolobus halotolerans sp. nov., isolated from the saline Lake Tus in Siberia.	Shen Y, Chen SC, Lai MC, Huang HH, Chiu HH, Tang SL, Rogozin DY, Degermendzhy AG	Int J Syst Evol Microbiol	10.1099/ijsem.0.004453	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67277	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107642
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Methanolobus halotolerans (DSM 107642, NBRC 113166, BCRC AR10051)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_004745425

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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