Name: Botrimarina hoheduenensis Pla111
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160326

Type strain:

Species: Botrimarina hoheduenensis

Strain Designation: Pla111

Culture col. no.: DSM 103485, STH 00945

Strain history: <- M. Jogler, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; Pla111 <- Anja Heuer

NCBI tax ID(s): 2528000 (species)

SI-ID 401539

DSM 103485

Section

Botrimarina hoheduenensis Pla111 is a mesophilic, Gram-negative, other bacterium that was isolated from Station 4.

Gram-negative
other
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Planctomycetota*
	Class	*Planctomycetia*
	Order	*Pirellulales*
	Family	*Lacipirellulaceae*
	Genus	*Botrimarina*
	Species	**Botrimarina hoheduenensis**
	Full Scientific Name (LPSN)	Botrimarina hoheduenensis Wiegand et al. 2022

Information on morphological and physiological properties Morphology

[Ref.: #68355]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.937

[Ref.: #68355]	Cell length	1.1-1.5 µm

[Ref.: #68355]	Cell width	0.6-0.8 µm

[Ref.: #68355]	Cell shape	other

[Ref.: #68355]

Colony color

carnation-pink

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67229]

Culture medium

PLANCTOMYCES MEDIUM (DSMZ Medium 1560)

[Ref.: #67229]

Culture medium growth

[Ref.: #67229]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67229]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #67229]	growth	28 °C
[Ref.: #68355]	growth	10-33 °C
[Ref.: #68355]	optimum	27 °C

[Ref.: #67229]	Temperature range	mesophilic
[Ref.: #68355]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68355]			optimum	7
[Ref.: #68355]			growth	6.5-7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %100
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #68355]	Observation	form loose aggregates
[Ref.: #68355]	Observation	divide by budding
[Ref.: #68355]	Observation	feature a dimorphic life cycle

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67229]	Sample type/isolated from	Station 4
[Ref.: #67229]	Geographic location (country and/or sea, region)	Rostock Hohe Düne
[Ref.: #67229]	Country	Germany
[Ref.: #67229]	Country ISO 3 Code	DEU
[Ref.: #67229]	Continent	Europe

[Ref.: #68355]	Sample type/isolated from	Biofilm formed in a small incubator, which in turn was stored in a depth of 2 metres for 14 days close to the yacht harbour
[Ref.: #68355]	Geographic location (country and/or sea, region)	Hohe Düne, a local district of Rostock
[Ref.: #68355]	Country	Germany
[Ref.: #68355]	Country ISO 3 Code	DEU
[Ref.: #68355]	Continent	Europe
[Ref.: #68355]	Enrichment culture	M1H NAG ASW medium
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68355]	Botrimarina hoheduenensis strain Pla111 16S ribosomal RNA gene, partial sequence	MK554579	1525	ENA	2528000 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68355]	Botrimarina hoheduenensis Pla111	GCA_007859815	scaffold	GenBank	2528000 tax ID

[Ref.: #68355]	GC-content	60.5-65.7 mol%	genome sequence analysis
[Ref.: #67229]	GC-content	63.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Botrimarina hoheduenensis Pla111 NCBI: GCA_007859815.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Botrimarina hoheduenensis Pla111 NCBI: GCA_007859815.1
[Ref.: #69480]	flagellated	no	76.735	no
[Ref.: #69480]	gram-positive	no	98.053	yes
[Ref.: #69480]	anaerobic	no	98.274	no
[Ref.: #69480]	aerobic	yes	82.503	no
[Ref.: #69480]	halophile	no	66.628	no
[Ref.: #69480]	spore-forming	no	94.548	no
[Ref.: #69480]	glucose-util	yes	88.1	no
[Ref.: #69480]	thermophile	no	57.511	no
[Ref.: #69480]	motile	yes	85.153	no
[Ref.: #69480]	glucose-ferment	no	89.1	no

Availability in culture collections External links

[Ref.: #67229]

Culture collection no.

DSM 103485, STH 00945

[Ref.: #112581]

SI-ID 401539

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Updates to the recently introduced family Lacipirellulaceae in the phylum Planctomycetes: isolation of strains belonging to the novel genera Aeoliella, Botrimarina, Pirellulimonas and Pseudobythopirellula and the novel species Bythopirellula polymerisocia and Posidoniimonas corsicana.	Wiegand S, Jogler M, Boedeker C, Heuer A, Peeters SH, Kallscheuer N, Jetten MSM, Kaster AK, Rohde M, Jogler C	Antonie Van Leeuwenhoek	10.1007/s10482-020-01486-3	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67229

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103485

#68355

Sandra Wiegand, Mareike Jogler, Christian Boedeker, Anja Heuer, Stijn H. Peeters, Nicolai Kallscheuer, Mike S. M. Jetten, Anne-Kristin Kaster, Manfred Rohde & Christian Jogler: Updates to the recently introduced family Lacipirellulaceae in the phylum Planctomycetes: isolation of strains belonging to the novel genera Aeoliella, Botrimarina, Pirellulimonas and Pseudobythopirellula and the novel species Bythopirellula polymerisocia and Posidoniimonas corsicana. Antonie Van Leeuwenhoek 113: 1979 - 1997 2020 ( DOI 10.1007/s10482-020-01486-3 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112581

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401539.1 )

* These data were automatically processed and therefore are not curated

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