Name: Bifidobacterium erythrocebi VB31
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160295

Type strain:

Species: Bifidobacterium erythrocebi

Strain Designation: VB31

Culture col. no.: DSM 109960

Strain history: <- V. Bunesova, Czech University of Life Sciences Prague; VB31

NCBI tax ID(s): 2675325 (species)

SI-ID 399588

DSM 109960

Section

Bifidobacterium erythrocebi VB31 is an anaerobe, mesophilic bacterium that was isolated from feces of a Erythrocebus patas .

anaerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium erythrocebi**
	Full Scientific Name (LPSN)	Bifidobacterium erythrocebi Neuzil-Bunesova et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %95.164

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67198]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)

[Ref.: #67198]

Culture medium growth

[Ref.: #67198]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67198]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67198]			growth	37 °C

[Ref.: #67198]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %99.733

[Ref.: #69480]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67198]	Sample type/isolated from	feces of a Erythrocebus patas (Patas monkey)
[Ref.: #67198]	Geographic location (country and/or sea, region)	Olomouc (City) - ZOO
[Ref.: #67198]	Country	Czech Republic
[Ref.: #67198]	Country ISO 3 Code	CZE
[Ref.: #67198]	Continent	Europe
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bifidobacterium sp. DSM 109960	GCA_012932675	contig	GenBank	2705432 tax ID	*
[Ref.: #66792]	Bifidobacterium sp. DSM 109960	2705432.3	wgs	PATRIC	2705432 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bifidobacterium sp. DSM 109960 PATRIC: 2705432.3
[Ref.: #69481]	spore-forming	no	88	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bifidobacterium sp. DSM 109960 PATRIC: 2705432.3
[Ref.: #69480]	motile	no	92.513	no
[Ref.: #69480]	gram-positive	yes	89.462	no
[Ref.: #69480]	anaerobic	yes	98.787	no
[Ref.: #69480]	halophile	no	68.222	no
[Ref.: #69480]	spore-forming	no	96.057	no
[Ref.: #69480]	glucose-util	yes	88.609	no
[Ref.: #69480]	aerobic	no	97.762	no
[Ref.: #69480]	flagellated	no	95.975	no
[Ref.: #69480]	thermophile	no	95.902	yes
[Ref.: #69480]	glucose-ferment	yes	84.893	no

Availability in culture collections External links

[Ref.: #67198]

Culture collection no.

DSM 109960

[Ref.: #112558]

SI-ID 399588

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Five novel bifidobacterial species isolated from faeces of primates in two Czech zoos: Bifidobacterium erythrocebi sp. nov., Bifidobacterium moraviense sp. nov., Bifidobacterium oedipodis sp. nov., Bifidobacterium olomucense sp. nov. and Bifidobacterium panos sp. nov.	Neuzil-Bunesova V, Lugli GA, Modrackova N, Vlkova E, Bolechova P, Burtscher J, Longhi G, Mancabelli L, Killer J, Domig K, Ventura M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004573	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67198

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 109960

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112558

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399588.1 )

* These data were automatically processed and therefore are not curated

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Bifidobacterium sp. DSM 109960

Bifidobacterium sp. DSM 109960

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