Name: Syntrophotalea acetylenivorans SFB93
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160292

Type strain:

Species: Syntrophotalea acetylenivorans

Strain Designation: SFB93

Culture col. no.: DSM 106009, JCM 33327, ATCC TSD-118

Strain history: S. M. Baesman; US Geol. Surv., USA; SFB93.

NCBI tax ID(s): 1842532 (species)

SI-ID 400227

DSM 106009

Section

Syntrophotalea acetylenivorans SFB93 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from San Francisco Bay Sediment.

Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfuromonadales*
	Family	*Syntrophotaleaceae*
	Genus	*Syntrophotalea*
	Species	**Syntrophotalea acetylenivorans**
	Full Scientific Name (LPSN)	Syntrophotalea acetylenivorans Baesman et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.97

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67196]

Culture medium

ANAEROBIC SEAWATER (SWM) MEDIUM (DSMZ Medium 504)

[Ref.: #67196]

Culture medium growth

[Ref.: #67196]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67196]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67196]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #67196]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %98.65

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.174
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67196]	Sample type/isolated from	San Francisco Bay Sediment
[Ref.: #67196]	Geographic location (country and/or sea, region)	Palo Alto, Baylands Palo, CA
[Ref.: #67196]	Country	USA
[Ref.: #67196]	Country ISO 3 Code	USA
[Ref.: #67196]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Intertidal sediments of South San Francisco Bay
[Ref.: #67770]	Geographic location (country and/or sea, region)	located near Palo Alto, CA
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence JQ085863 (>99% sequence identity) for Syntrophotalea acetylenivorans subclade from Microbeatlas

Aquatic Samples	294
Soil Samples	15
Animal Samples	2
Plant Samples	3
Total Samples	314

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67196]	Pelobacter sp. SFB93 16S ribosomal RNA gene, partial sequence	JQ085863	1476	ENA	1842532 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Syntrophotalea acetylenivorans SFB93	GCA_001887775	complete	GenBank	1842532 tax ID	*

[Ref.: #67196]	GC-content	53.4 mol%	sequence analysis
[Ref.: #67770]	GC-content	53.4 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Syntrophotalea acetylenivorans SFB93 NCBI: GCA_001887775.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Syntrophotalea acetylenivorans SFB93 NCBI: GCA_001887775.1
[Ref.: #69480]	flagellated	no	59.598	no
[Ref.: #69480]	gram-positive	no	99.06	no
[Ref.: #69480]	anaerobic	yes	96.07	no
[Ref.: #69480]	aerobic	no	94.161	no
[Ref.: #69480]	halophile	no	60.863	no
[Ref.: #69480]	spore-forming	no	95.987	no
[Ref.: #69480]	glucose-util	yes	54.607	no
[Ref.: #69480]	thermophile	no	93.286	yes
[Ref.: #69480]	motile	yes	86.391	no
[Ref.: #69480]	glucose-ferment	no	84.291	no

Availability in culture collections External links

[Ref.: #67196]

Culture collection no.

DSM 106009, JCM 33327, ATCC TSD-118

[Ref.: #112555]

SI-ID 400227

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Syntrophotalea acetylenivorans sp. nov., a diazotrophic, acetylenotrophic anaerobe isolated from intertidal sediments.	Baesman SM, Sutton JM, Fierst JL, Akob DM, Oremland RS	Int J Syst Evol Microbiol	10.1099/ijsem.0.004698	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67196

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106009

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112555

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400227.1 )

* These data were automatically processed and therefore are not curated

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