Name: Streptomyces spiroverticillatus 508
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16029

Type strain:

Species: Streptomyces spiroverticillatus

Strain Designation: 508

Culture col. no.: DSM 40036, ATCC 19811, CBS 564.68, IFO 12821, ISP 5036, NBRC 12821, RIA 1091, RIA 549, OEU 508, JCM 4104, BCRC 13648, CGMCC 4.1749, IFO 3845, IMET 42050, JCM 4609, NBRC 3845, NRRL B-2259, NRRL B-5483, VKM Ac-751

Strain history: KCC S-0104 <-- R. Shinobu 508.

NCBI tax ID(s): 67366 (species)

SI-ID 92670

ATCC 19811, IFO 12821, DSM 40036, JCM 4104, CCRC 13648, IFO 3728, IMET 42050, NRRL B-2259, NRRL B-5483, VKM Ac-751, JCM 4609, IFO 3931, NBIMCC 3604, CBS 564.68, NBRC 12821, NBRC 3728, NBRC 3931, BCRC 13648, CGMCC 4.1749, VTT E-052932, AS 4.1749

Section

Streptomyces spiroverticillatus 508 is a spore-forming, mesophilic bacterium that was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces spiroverticillatus**
	Full Scientific Name (LPSN)	Streptomyces spiroverticillatus Shinobu 1958 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.986

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9235]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9235]

Culture medium growth

[Ref.: #9235]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9235]

Culture medium composition

expand / minimize

[Ref.: #9235]

Culture medium

ISP 5 MEDIUM (DSMZ Medium 993)

[Ref.: #9235]

Culture medium growth

[Ref.: #9235]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9235]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9235]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9235]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #20216]	Name of produced compound	Antibiotic agent
[Ref.: #20216]	Name of produced compound	Antifungal agent

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9235]	Sample type/isolated from	soil
[Ref.: #9235]	Country	Japan
[Ref.: #9235]	Country ISO 3 Code	JPN
[Ref.: #9235]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Higashinoshiro, Akita Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB184814 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	1
Soil Samples	103
Animal Samples	6
Plant Samples	2
Total Samples	112

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9235]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces spiroverticillatus strain ISP 5036 16S ribosomal RNA gene, partial sequence	AY999736	1448	ENA	67366 tax ID	*
[Ref.: #20218]	Streptomyces spiroverticillatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4609	D44263	120	ENA	67366 tax ID	*
[Ref.: #20218]	Streptomyces spiroverticillatus gene for 16S rRNA, partial sequence, strain: NBRC 12821	AB249921	1451	ENA	67366 tax ID	*
[Ref.: #20218]	Streptomyces spiroverticillatus gene for 16S rRNA, partial sequence, strain: NBRC 3728	AB184796	1460	ENA	67366 tax ID	*
[Ref.: #20218]	Streptomyces spiroverticillatus gene for 16S rRNA, partial sequence, strain: NBRC 3931	AB184814	1477	ENA	67366 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces spiroverticillatus strain JCM 4609	67366.4	wgs	PATRIC	67366 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces spiroverticillatus strain JCM 4609 PATRIC: 67366.4
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces spiroverticillatus strain JCM 4609 PATRIC: 67366.4
[Ref.: #69480]	gram-positive	yes	89.874	no
[Ref.: #69480]	anaerobic	no	99.204	no
[Ref.: #69480]	halophile	no	92.758	no
[Ref.: #69480]	spore-forming	yes	94.449	no
[Ref.: #69480]	glucose-util	yes	88.508	no
[Ref.: #69480]	thermophile	no	99.614	yes
[Ref.: #69480]	flagellated	no	97.504	no
[Ref.: #69480]	aerobic	yes	93.18	no
[Ref.: #69480]	glucose-ferment	no	86.005	no
[Ref.: #69480]	motile	no	92.826	no

Availability in culture collections External links

[Ref.: #9235]

Culture collection no.

DSM 40036, ATCC 19811, CBS 564.68, IFO 12821, ISP 5036, NBRC 12821, RIA 1091, RIA 549, OEU 508, JCM 4104, BCRC 13648, CGMCC 4.1749, IFO 3845, IMET 42050, JCM 4609, NBRC 3845, NRRL B-2259, NRRL B-5483, VKM Ac-751

[Ref.: #85102]

SI-ID 92670

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces fukangensis sp. nov., a novel alkaliphilic actinomycete isolated from a saline-alkaline soil.	Zhang YG, Wang HF, Liu Q, Hozzein WN, Wadaan MA, Cheng J, Chen YJ, Zhang YM, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-013-0045-8	2013	*

References

#9235

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40036

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85102

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92670.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces spiroverticillatus strain JCM 4609

Streptomyces spiroverticillatus strain JCM 4609

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