Name: Bifidobacterium canis GSD1FS
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160289

Type strain:

Species: Bifidobacterium canis

Strain Designation: GSD1FS

Culture col. no.: DSM 105923

Strain history: <- V. Bunesova, Czech University of Life Sciences Prague; GSD 1FS

NCBI tax ID(s): 2610880 (species)

SI-ID 406552

DSM 105923

Section

Bifidobacterium canis GSD1FS is a mesophilic bacterium that was isolated from faeces of dog.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium canis**
	Full Scientific Name (LPSN)	Bifidobacterium canis Neuzil-Bunesova et al. 2020

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67193]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)

[Ref.: #67193]

Culture medium growth

[Ref.: #67193]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67193]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67193]			growth	37 °C

[Ref.: #67193]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67193]	Sample type/isolated from	faeces of dog
[Ref.: #67193]	Geographic location (country and/or sea, region)	West Bohemia
[Ref.: #67193]	Country	Czech Republic
[Ref.: #67193]	Country ISO 3 Code	CZE
[Ref.: #67193]	Continent	Europe
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67193]	Bifidobacterium sp. strain GSD1FS 16S ribosomal RNA gene, partial sequence	MG028631	1454	ENA	2610880 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bifidobacterium canis GSD1FS	GCA_009727065	contig	GenBank	2610880 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bifidobacterium canis GSD1FS NCBI: GCA_009727065.1
[Ref.: #69480]	flagellated	no	97.54	no
[Ref.: #69480]	gram-positive	yes	90.632	no
[Ref.: #69480]	anaerobic	yes	98.254	no
[Ref.: #69480]	aerobic	no	96.243	no
[Ref.: #69480]	halophile	no	72.268	no
[Ref.: #69480]	spore-forming	no	95.325	no
[Ref.: #69480]	thermophile	no	97.518	yes
[Ref.: #69480]	glucose-util	yes	87.939	no
[Ref.: #69480]	motile	no	94.021	no
[Ref.: #69480]	glucose-ferment	yes	81.098	no

Availability in culture collections External links

[Ref.: #67193]

Culture collection no.

DSM 105923

[Ref.: #112552]

SI-ID 406552

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bifidobacterium canis sp. nov., a novel member of the Bifidobacterium pseudolongum phylogenetic group isolated from faeces of a dog (Canis lupus f. familiaris).	Neuzil-Bunesova V, Lugli GA, Modrackova N, Makovska M, Mrazek J, Mekadim C, Musilova S, Svobodova I, Spanek R, Ventura M, Killer J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004378	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67193

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105923

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#112552

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406552.1 )

* These data were automatically processed and therefore are not curated

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