Brevundimonas pondensis (DSM 112304, CCUG 74982, LMG 32096)

Name: Brevundimonas pondensis (DSM 112304, CCUG 74982, LMG 32096)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160215

Type strain

Strain Designation LVF1

Culture col. no. DSM 112304 CCUG 74982 LMG 32096 LVF1

NCBI tax ID(s) 2774189

Special Collections DSMZ CCUG

History <- I. Friedrich, Universität Göttingen, Germany; <- I. Friedrich, Universität Göttingen, Germany; {2016}

Links

Brevundimonas pondensis LVF1 is a bacterium that was isolated from Pond water from an oligotrophic pond located in Göttingen, Germany.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 398929

LMG 32096,DSM 112304,CCUG 74982

@ref 20215

Last LPSN update 2026-02-09 11:38:50

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Caulobacterales

Family Caulobacteraceae

Genus Brevundimonas

Species Brevundimonas pondensis

Full scientific name Brevundimonas pondensis Friedrich et al. 2021

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	93.4
125438	negative	96.994

Multimedia

@ref:	67119
multimedia content:	DSM_112304.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_112304.jpg
caption:	DSM 112304; scale bar represents 2 µm
intellectual property rights:	Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67119	CAULOBACTER MEDIUM (DSMZ Medium 595)		Medium recipe at MediaDive	Name: CAULOBACTER MEDIUM (DSMZ Medium 595) Composition: Agar 15.0 g/l Bacto peptone 2.0 g/l Yeast extract 1.0 g/l MgSO4 x 7 H2O 0.2 g/l Tap water

Culture temp

@ref	Growth	Type	Temperature (°C)
67119	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	94.4

Spore formation

@ref	Spore formation	Confidence
125439		93.5

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
67119	Pond water from an oligotrophic pond located in Göttingen, Germany	Pond water from an oligotrophic pond located in Göttingen, Germany	Germany	DEU	Europe	51.5658	9.9556 51.5658/9.9556

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1748734v1 assembly for Brevundimonas pondensis LVF1	complete	GCA_017487345	2774189.3	8003062096	2774189	96.85

GC content

@ref	GC-content (mol%)	Method
67119	67.04	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Brevundimonas pondensis LVF1
NCBI: GCA_017487345

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	93.50	no
125439	motility	BacteriaNetⓘ	yes	73.10	no
125439	gram_stain	BacteriaNetⓘ	negative	93.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Brevundimonas pondensis LVF1
NCBI: GCA_017487345.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.99	no
125438	anaerobic	anaerobicⓘ	no	89.20	no
125438	aerobic	aerobicⓘ	yes	83.40	no
125438	spore-forming	spore-formingⓘ	no	89.95	no
125438	thermophilic	thermophileⓘ	no	98.41	yes
125438	flagellated	motile2+ⓘ	yes	60.74	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67119	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 112304
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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