Anaerocolumna sedimenticola (DSM 110663, KACC 21652, CBA3638)

Name: Anaerocolumna sedimenticola (DSM 110663, KACC 21652, CBA3638)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160206

Type strain

Strain Designation CBA3638

Culture col. no. DSM 110663 KACC 21652 CBA3638

NCBI tax ID(s) 2696063

Special Collections DSMZ

Links

Anaerocolumna sedimenticola CBA3638 is a mesophilic prokaryote that was isolated from river sediment.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 398689

DSM 110663

@ref 20215

Last LPSN update 2025-12-16 10:08:26

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Anaerocolumna

Species Anaerocolumna sedimenticola

Full scientific name Anaerocolumna sedimenticola Kim et al. 2022

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67110	SPOROMUSA ACIDOVORANS MEDIUM (DSMZ Medium 311c)		Medium recipe at MediaDive	Name: SPOROMUSA ACIDOVORANS MEDIUM (DSMZ Medium 311c) Composition: D-Fructose 4.97512 g/l NaCl 2.23881 g/l Yeast extract 1.99005 g/l Casitone 1.99005 g/l Na2CO3 0.995025 g/l MgSO4 x 7 H2O 0.497512 g/l NH4Cl 0.497512 g/l K2HPO4 0.348259 g/l Na2S x 9 H2O 0.298507 g/l L-Cysteine HCl x H2O 0.298507 g/l CaCl2 x 2 H2O 0.248756 g/l KH2PO4 0.228856 g/l HCl 0.00248756 g/l FeSO4 x 7 H2O 0.00199005 g/l FeCl2 x 4 H2O 0.00149254 g/l NaOH 0.000497512 g/l Sodium resazurin 0.000497512 g/l CoCl2 x 6 H2O 0.000189055 g/l Pyridoxine hydrochloride 9.95025e-05 g/l MnCl2 x 4 H2O 9.95025e-05 g/l ZnCl2 6.96517e-05 g/l p-Aminobenzoic acid 4.97512e-05 g/l Calcium D-(+)-pantothenate 4.97512e-05 g/l Nicotinic acid 4.97512e-05 g/l Riboflavin 4.97512e-05 g/l Thiamine HCl 4.97512e-05 g/l (DL)-alpha-Lipoic acid 4.97512e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l Biotin 1.99005e-05 g/l Folic acid 1.99005e-05 g/l H3BO3 5.97015e-06 g/l Na2WO4 x 2 H2O 3.9801e-06 g/l Na2SeO3 x 5 H2O 2.98507e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l Vitamin B12 9.95025e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67110	positive	growth	35	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	91.3

Spore formation

@ref	Spore formation	Confidence
125439		92.5

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67110	river sediment	Jinan-gun, Jeollabuk-do, Geum river	Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM993169v1 assembly for Anaerocolumna sedimenticola CBA3638	complete	GCA_009931695	2696063.3	2883816592	2696063	88.68

Genome browser: GCA_009931695

GC content

@ref	GC-content (mol%)	Method
67110	36.7	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Anaerocolumna sedimenticola CBA3638
NCBI: GCA_009931695

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	92.50	no
125439	motility	BacteriaNetⓘ	yes	85.90	no
125439	gram_stain	BacteriaNetⓘ	variable	73.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Anaerocolumna sedimenticola CBA3638
NCBI: GCA_009931695.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	57.61	no
125438	anaerobic	anaerobicⓘ	yes	84.25	no
125438	aerobic	aerobicⓘ	no	91.80	no
125438	spore-forming	spore-formingⓘ	yes	74.74	no
125438	thermophilic	thermophileⓘ	no	89.24	yes
125438	flagellated	motile2+ⓘ	yes	83.33	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Anaerocolumna sedimenticola sp. nov., isolated from fresh water sediment.	Kim J, Kim JY, Song HS, Kim YB, Whon TW, Ahn SW, Lee SH, Yoo S, Kim YJ, Myoung J, Choi YE, Son HS, Roh SW	Antonie Van Leeuwenhoek	10.1007/s10482-021-01536-4	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67110	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110663
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Anaerocolumna sedimenticola (DSM 110663, KACC 21652, CBA3638)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_009931695

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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