Name: Phocaeicola vulgatus CCUG 12546
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1602

Type strain:

Species: Phocaeicola vulgatus

Culture col. no.: CCUG 12546, KCTC 2639, DSM 3289, ATCC 29327, WAL 1887

Strain history: <- ATCC <- Wadsworth Anaerobic Bact. Res. Lab., WAL 1887

NCBI tax ID(s): 821 (species)

SI-ID 39470

ATCC 29327, CCUG 12546, DSM 3289, KCTC 2639

Other strains from Phocaeicola vulgatus

P. vulgatus LRA 049 07 85, DSM 1447, ATCC 8482, ... (type strain)
P. vulgatus mprl 1840, MPRL 1840/MH4, DSM 9670
P. vulgatus 39a-cc-B-5824-ARE, DSM 28735
P. vulgatus H4_2, DSM 108222
P. vulgatus H5_1, DSM 108228
P. vulgatus H6_5, DSM 108234
P. vulgatus WCA-389-WT-3C, DSM 107446

Section

Phocaeicola vulgatus CCUG 12546 is an anaerobe, mesophilic human pathogen that was isolated from retroperitoneal abscess.

anaerobe
human pathogen
mesophilic
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Bacteroidaceae*
	Genus	*Phocaeicola*
	Species	**Phocaeicola vulgatus**
	Full Scientific Name (LPSN)	Phocaeicola vulgatus (Eggerth and Gagnon 1933) García-López et al. 2020

Synonym

Bacteroides vulgatus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1346]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #1346]

Culture medium growth

[Ref.: #1346]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1346]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1346]			growth	37 °C

[Ref.: #1346]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1346]

Oxygen tolerance

anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	+	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	+	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	+		* from API rID32A
[Ref.: #68380]	glycin arylamidase	+		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #45742]	5122	-	-	+	+	-	+	-	+	-	+	+	+	-	+	-	-	+	-	-	+	-	-	-	-	+	+	-	+	-
[Ref.: #1346]	12141	-	-	+	+	+/-	+	-	+	+/-	+	+	+	-	+	-	-	+	-	-	+	-	-	-	-	+	+	-	+	-
[Ref.: #1346]	12140	-	-	+	+	+/-	+	-	+	+/-	+	+	+	-	+	-	-	+	-	-	+	-	-	-	-	+	+	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1346]	Sample type/isolated from	retroperitoneal abscess

[Ref.: #45742]	Sample type/isolated from	Human retroperitoneal abscess
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Other	#Abdomen
#Host Body-Site	#Other	#Abscess

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1346]	Pathogenicity (human)	yes, in single cases
[Ref.: #1346]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Availability in culture collections External links

[Ref.: #1346]

Culture collection no.

CCUG 12546, KCTC 2639, DSM 3289, ATCC 29327, WAL 1887

[Ref.: #71247]

SI-ID 39470

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Evaluation of broth microdilution susceptibility results for anaerobic organisms by use of a rapid direct colony inoculum.	Mangels JI, Lindberg LH	J Clin Microbiol	10.1128/jcm.21.2.269-272.1985	1985	*

References

#1346

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3289

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#45742 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 12546

#68380

Automatically annotated from API rID32A .

#71247

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39470.1 )

* These data were automatically processed and therefore are not curated

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