Streptomyces zagrosensis HM 1154 | Type strain | DSM 42018, CECT 8305, UTMC 1154 | BacDiveID:16018

Strain identifier

BacDive ID: 16018

Type strain:

Species: Streptomyces zagrosensis

Strain Designation: HM 1154

Culture col. no.: DSM 42018, CECT 8305, UTMC 1154

Strain history: <- J. Hamedi, Univ. Tehran, Iran <- F. Mohammadipanah; UTMC 1154

NCBI tax ID(s): 1042984 (species)

SI-ID 394442

DSM 42018, CECT 8305

Special Collections

Section

Streptomyces zagrosensis HM 1154 is a spore-forming bacterium that was isolated from rhizospheric soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces zagrosensis**
	Full Scientific Name (LPSN)	Streptomyces zagrosensis Mohammadipanah et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #21422]	Colony color	Ivory (1014)
[Ref.: #21422]	Incubation period	10-14 days
[Ref.: #21422]	Cultivation medium used	ISP 2

[Ref.: #21422]	Colony color	Light ivory (1015)
[Ref.: #21422]	Incubation period	10-14 days
[Ref.: #21422]	Cultivation medium used	ISP 3

[Ref.: #21422]	Colony color	Light ivory (1015)/ Maize yellow (1006)
[Ref.: #21422]	Incubation period	10-14 days
[Ref.: #21422]	Cultivation medium used	ISP 4

[Ref.: #21422]	Colony color	Ivory (1014)
[Ref.: #21422]	Incubation period	10-14 days
[Ref.: #21422]	Cultivation medium used	ISP 5

[Ref.: #21422]	Colony color	Light ivory (1015)
[Ref.: #21422]	Incubation period	10-14 days
[Ref.: #21422]	Cultivation medium used	ISP 6

[Ref.: #21422]	Colony color	Ivory (1014)
[Ref.: #21422]	Incubation period	10-14 days
[Ref.: #21422]	Cultivation medium used	ISP 7

[Ref.: #21422]	Colony color	Ivory (1014)
[Ref.: #21422]	Incubation period	10-14 days
[Ref.: #21422]	Cultivation medium used	Suter with tyrosine

[Ref.: #21422]	Colony color	Ivory (1014)
[Ref.: #21422]	Incubation period	10-14 days
[Ref.: #21422]	Cultivation medium used	Suter without tyrosine

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

Medium 65 28°C

Intellectual property rights:

© Leibniz-Institut DSMZ

Information on culture and growth conditions Culture and growth conditions

Culture medium

ISP 2

Culture medium growth

Culture medium composition

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Culture medium

ISP 3

Culture medium growth

Culture medium composition

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Culture medium

ISP 4

Culture medium growth

Culture medium composition

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Culture medium

ISP 5

Culture medium growth

Culture medium composition

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Culture medium

ISP 6

Culture medium growth

Culture medium composition

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Culture medium

ISP 7

Culture medium growth

Culture medium composition

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Culture medium

Suter with tyrosine

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

Suter without tyrosine

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17339]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

Ability of spore formation

yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #21422]		NaCl		maximum	5	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #21422]		arabinose ChEBI	-
[Ref.: #21422]		cellulose ChEBI	-
[Ref.: #68379]		D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]		D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]		D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]		D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]		esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #21422]		fructose ChEBI	-
[Ref.: #68379]		gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #21422]		glucose ChEBI	+
[Ref.: #68379]		glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]		lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]		maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #21422]		mannose ChEBI	-
[Ref.: #21422]		myo-inositol ChEBI	-
[Ref.: #68379]		nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #21422]		raffinose ChEBI	-
[Ref.: #21422]		rhamnose ChEBI	-
[Ref.: #21422]		sucrose ChEBI	-
[Ref.: #68379]		sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]		urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #21422]		xylose ChEBI	-
		Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #68382]		acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]		alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]		alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]		alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]		alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]		alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]		beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68379]		beta-galactosidase	-	3.2.1.23	* from API Coryne
[Ref.: #68379]		beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]		beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]		cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]		esterase (C 4)	+		* from API zym
[Ref.: #68382]		esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]		gelatinase	+		* from API Coryne
[Ref.: #68382]		leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68379]		N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]		naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]		pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]		pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]		trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]		urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]		valine arylamidase	+		* from API zym
		Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #21422]	539	-	-	+	+	-	-	+	-	-	+	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #21422]	1059	not determinedn.d.	+	+	+	+/-	+	+	+	+	+/-	+	+	-	+	-	+	-	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17339]	Sample type/isolated from	rhizospheric soil
[Ref.: #17339]	Geographic location (country and/or sea, region)	Fars Province
[Ref.: #17339]	Country	Iran
[Ref.: #17339]	Country ISO 3 Code	IRN
[Ref.: #17339]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21422]	Biosafety level	L1	German classification
[Ref.: #17339]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17339]	Streptomyces zagrosensis strain UTMC 1154 16S ribosomal RNA gene, partial sequence	JF917242	1508	GenBank ENA	1042984 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces zagrosensis CECT 8305	GCA_014203645	contig	GenBank ENA	1042984 tax ID	*
[Ref.: #66792]	Streptomyces zagrosensis strain CECT 8305	1042984.3	wgs	PATRIC	1042984 tax ID	*
[Ref.: #66792]	Streptomyces zagrosensis CECT 8305	2863307210	draft	JGI IMG/M	1042984 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces zagrosensis strain CECT 8305 PATRIC: 1042984.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces zagrosensis strain CECT 8305 PATRIC: 1042984.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.072	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.746	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	89.939	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	83.873	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88	no

Availability in culture collections External links

Culture collection no.

DSM 42018, CECT 8305, UTMC 1154

SI-ID 394442

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces zagrosensis sp. nov., isolated from soil.	Mohammadipanah F, Hamedi J, Sproer C, Rohde M, Montero-Calasanz MDC, Klenk HP	Int J Syst Evol Microbiol	10.1099/ijs.0.064527-0	2014	*
Pathogenicity	Protective Effects of Cryoprotectants and Lyoprotectants on the Survival of Persipeptide Producing Streptomyces zagrosensis UTMC 1154.	Mohammadipanah F, Parvizi L, Hamedi J, Azizmohseni F	Biopreserv Biobank	10.1089/bio.2017.0046	2017	*
	In-Situ Recovery of Persipeptides from Streptomyces zagrosensis Fermentation Broth by Enhanced Adsorption.	Kazemi Shariat Panahi H, Mohammadipanah F, Rahmati F, Tarlani A, Hamedi J	Iran J Biotechnol	10.30498/IJB.2020.125909.2231	2020	*

References

#17339

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42018

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21422

Wink, J.: Compendium of Actinobacteria . HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85092

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID394442.1 )

* These data were automatically processed and therefore are not curated

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