Raoultibacter massiliensis (DSM 103407, Marseille-P2849)

Name: Raoultibacter massiliensis (DSM 103407, Marseille-P2849)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160157

Type strain

Culture col. no. DSM 103407 Marseille-P2849

NCBI tax ID(s) 1852371

Special Collections DSMZ Cadoret human gut

Links

Raoultibacter massiliensis DSM 103407 is a mesophilic prokaryote that was isolated from Stool sample from patient.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 398042

DSM 103407

@ref 20215

Last LPSN update 2025-12-16 10:08:25

Domain Bacillati

Phylum Actinomycetota

Class Coriobacteriia

Order Eggerthellales

Family Eggerthellaceae

Genus Raoultibacter

Species Raoultibacter massiliensis

Full scientific name Raoultibacter massiliensis Traore et al. 2022

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67061	CHOPPED MEAT MEDIUM (DSMZ Medium 78)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67061	positive	growth	37	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.4

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67061	Stool sample from patient	Marseille	France	FRA	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	PRJEB21863 assembly for Raoultibacter massiliensis Marseille-P2849	scaffold	GCA_900199545	1852371.3	2831950292	1852371	69.26

Genome browser: GCA_900199545

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Eggerthellaceae bacterium Marseille-P2849 partial 16S rRNA gene, strain Marseille-P2849	LT576395	1472		1852371

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Raoultibacter massiliensis Marseille-P2849
NCBI: GCA_900199545

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	yes	71.90	no
125439	gram_stain	BacteriaNetⓘ	negative	98.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	79.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Raoultibacter massiliensis Marseille-P2849
NCBI: GCA_900199545.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	76.67	no
125438	anaerobic	anaerobicⓘ	yes	79.30	no
125438	aerobic	aerobicⓘ	no	84.53	no
125438	spore-forming	spore-formingⓘ	no	78.92	no
125438	thermophilic	thermophileⓘ	no	90.77	yes
125438	flagellated	motile2+ⓘ	no	84.45	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Metatranscriptomics-guided discovery and characterization of a polyphenol-metabolizing gut microbial enzyme.	Bae M, Le C, Mehta RS, Dong X, Pieper LM, Ramirez L, Alexander M, Kiamehr S, Turnbaugh PJ, Huttenhower C, Chan AT, Balskus EP.	Cell Host Microbe	10.1016/j.chom.2024.10.002	2024
	Heated drinking water in winter improves growth performance of male Hu sheep by modulating rumen quorum sensing and metabolites, and enhancing serum antioxidant capacity.	Liu C, Li L, Dai J, Qu M, Ouyang K, Qiu Q.	Anim Biosci	10.5713/ab.24.0821	2025
	Consistent signatures in the human gut microbiome of longevous populations.	Chen S, Zhang Z, Liu S, Chen T, Lu Z, Zhao W, Mou X, Liu S.	Gut Microbes	10.1080/19490976.2024.2393756	2024
	Grape polyphenols reduce fasting glucose and increase hyocholic acid in healthy humans: a meta-omics study.	Mezhibovsky E, Wu G, Wu Y, Ning Z, Bacalia K, Sadangi S, Patel R, Poulev A, Duran RM, Macor M, Coyle S, Lam YY, Raskin I, Figeys D, Zhao L, Roopchand DE.	NPJ Sci Food	10.1038/s41538-025-00443-6	2025
Genetics	Extensive culturomics of 8 healthy samples enhances metagenomics efficiency.	Diakite A, Dubourg G, Dione N, Afouda P, Bellali S, Ngom II, Valles C, Million M, Levasseur A, Cadoret F, Lagier JC, Raoult D.	PLoS One	10.1371/journal.pone.0223543	2019
Genetics	A Genomic Toolkit for the Mechanistic Dissection of Intractable Human Gut Bacteria.	Bisanz JE, Soto-Perez P, Noecker C, Aksenov AA, Lam KN, Kenney GE, Bess EN, Haiser HJ, Kyaw TS, Yu FB, Rekdal VM, Ha CWY, Devkota S, Balskus EP, Dorrestein PC, Allen-Vercoe E, Turnbaugh PJ.	Cell Host Microbe	10.1016/j.chom.2020.04.006	2020
	"Raoultibacter massiliensis" gen. nov., sp. nov., a new bacterium isolated from the human gut of a Saudi Bedouin.	Traore SI, Yasir M, Azhar EI, Bibi F, Bittar F, Jiman-Fatani AA, Fournier PE, Edouard S.	New Microbes New Infect	10.1016/j.nmni.2016.06.013	2016
Phylogeny	Noncontiguous finished genome sequence and description of Raoultibacter massiliensis gen. nov., sp. nov. and Raoultibacter timonensis sp. nov, two new bacterial species isolated from the human gut.	Traore SI, Bilen M, Beye M, Diop A, Mbogning Fonkou MD, Tall ML, Michelle C, Yasir M, Ibraheem Azhar E, Bibi F, Bittar F, Jiman-Fatani AA, Daoud Z, Cadoret F, Fournier PE, Edouard S	Microbiologyopen	10.1002/mbo3.758	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67061	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103407
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Raoultibacter massiliensis (DSM 103407, Marseille-P2849)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900199545

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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