Name: Streptomyces nanshensis DSM 41925
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16012

Type strain:

Species: Streptomyces nanshensis

Variant: Isotype of BacDive ID 132886

Culture col. no.: DSM 41925, CCTCC AA 208005, KCTC 19400, SCSIO 01066, JCM 16226, DSM 104449

Strain history: KCTC 19400 <-- X.-P. Tian SCSIO 01066.

NCBI tax ID(s): 518642 (species)

SI-ID 401517

DSM 41925

Other strains from Streptomyces nanshensis

S. nanshensis DSM 104449, CCTCC AA 208005, KCTC ... (type strain)
S. nanshensis Sandoz 59283, DSM 40971

Section

Streptomyces nanshensis DSM 41925 is an aerobe, spore-forming, mesophilic bacterium that was isolated from deep-sea sediment sample.

Gram-positive
spiral-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces nanshensis**
	Full Scientific Name (LPSN)	Streptomyces nanshensis Tian et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #28999]	Gram stain	positive

[Ref.: #28999]	Cell shape	spiral-shaped

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #15445]	growth	28 °C
[Ref.: #28999]	growth	10-37 °C
[Ref.: #28999]	optimum	23.5 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #15445]	Temperature range	mesophilic
[Ref.: #28999]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #28999]			optimum	7
[Ref.: #28999]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #28999]		NaCl		growth	0-7	%
[Ref.: #28999]		NaCl		optimum	3.5	%

[Ref.: #28999]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₈), MK-9(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #28999]	arabinose ChEBI	+	carbon source
[Ref.: #28999]	cellobiose ChEBI	+	carbon source
[Ref.: #28999]	citrate ChEBI	+	carbon source
[Ref.: #28999]	fructose ChEBI	+	carbon source
[Ref.: #28999]	galactose ChEBI	+	carbon source
[Ref.: #28999]	glucose ChEBI	+	carbon source
[Ref.: #28999]	maltose ChEBI	+	carbon source
[Ref.: #28999]	mannitol ChEBI	+	carbon source
[Ref.: #28999]	mannose ChEBI	+	carbon source
[Ref.: #28999]	raffinose ChEBI	+	carbon source
[Ref.: #28999]	rhamnose ChEBI	+	carbon source
[Ref.: #28999]	ribose ChEBI	+	carbon source
[Ref.: #28999]	sucrose ChEBI	+	carbon source
[Ref.: #28999]	trehalose ChEBI	+	carbon source
[Ref.: #28999]	tween 20 ChEBI	+	carbon source
[Ref.: #28999]	tween 60 ChEBI	+	carbon source
[Ref.: #28999]	urea ChEBI	+	carbon source
[Ref.: #28999]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #28999]		catalase	+	1.11.1.6
[Ref.: #28999]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15445]	Sample type/isolated from	deep-sea sediment sample
[Ref.: #15445]	Geographic location (country and/or sea, region)	Northern South China Sea
[Ref.: #15445]	Country	China
[Ref.: #15445]	Country ISO 3 Code	CHN
[Ref.: #15445]	Continent	Asia
[Ref.: #15445]	Geographic location	6.6667°/113.5500°

[Ref.: #67770]	Sample type/isolated from	Deep-sea sediment from the sea area of the Nansha Islands in the South China Sea
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15445]	Streptomyces nanshensis strain SCSIO 01066 16S ribosomal RNA gene, partial sequence	EU589334	1405	ENA	518642 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces nanshensis SCSIO 01066	GCA_001751275	scaffold	GenBank	518642 tax ID

[Ref.: #15445]	GC-content	72.6 mol%
[Ref.: #67770]	GC-content	72.6 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces nanshensis SCSIO 01066 NCBI: GCA_001751275.1
[Ref.: #69480]	flagellated	no	98.216	no
[Ref.: #69480]	gram-positive	yes	89.799	no
[Ref.: #69480]	anaerobic	no	98.406	yes
[Ref.: #69480]	aerobic	yes	91.159	yes
[Ref.: #69480]	halophile	no	77.731	no
[Ref.: #69480]	spore-forming	yes	90.866	no
[Ref.: #69480]	glucose-util	yes	91.856	yes
[Ref.: #69480]	thermophile	no	96.661	yes
[Ref.: #69480]	motile	no	94.725	no
[Ref.: #69480]	glucose-ferment	no	91.446	no

Availability in culture collections External links

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Culture collection no.

DSM 41925, CCTCC AA 208005, KCTC 19400, SCSIO 01066, JCM 16226, DSM 104449

[Ref.: #85085]	SI-ID 401517	*
[Ref.: #85086]	SI-ID 412343	*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces nanshensis sp. nov., isolated from the Nansha Islands in the South China Sea.	Tian XP, Zhang YQ, Li QX, Zhi XY, Tang SK, Zhang S, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.003442-0	2009	*

References

#15445

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41925

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28999

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25432 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#85085

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401517.1 )

#85086

#25432

IJSEM 745 2009 ( DOI 10.1099/ijs.0.003442-0 , PubMed 19329599 )

* These data were automatically processed and therefore are not curated

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Streptomyces nanshensis SCSIO 01066

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