Name: Streptomyces scabichelini HC44
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160091

Type strain:

Species: Streptomyces scabichelini

Strain Designation: HC44

Culture col. no.: DSM 106874, KCTC 39872

Strain history: <- K. Isik, Ondokuz Mayis University, Samsun, Turkey; HC44 <-

NCBI tax ID(s): 2711217 (species)

SI-ID 404253

DSM 106874

Section

Streptomyces scabichelini HC44 is a mesophilic bacterium that builds an aerial mycelium and was isolated from soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces scabichelini**
	Full Scientific Name (LPSN)	Streptomyces scabichelini Gencbay et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #69332]	Colony color	Fawn brown (8007)
[Ref.: #69332]	Cultivation medium used	ISP 2

[Ref.: #69332]	Colony color	Fawn brown (8007)
[Ref.: #69332]	Cultivation medium used	ISP 5

[Ref.: #69332]	Colony color	Nut brown (8007)
[Ref.: #69332]	Cultivation medium used	ISP 7

[Ref.: #69332]	Colony color	Ochre yellow (1024)
[Ref.: #69332]	Cultivation medium used	ISP 6

[Ref.: #69332]	Colony color	Olive brown (8008)
[Ref.: #69332]	Cultivation medium used	ISP 4

[Ref.: #69332]	Colony color	Olive brown (8008), sepia brown (8014)
[Ref.: #69332]	Cultivation medium used	ISP 3

[Ref.: #69332]	Colony color	Sand yellow (1004)
[Ref.: #69332]	Cultivation medium used	suter with tyrosine

[Ref.: #69332]	Colony color	Sand yellow (1004)
[Ref.: #69332]	Cultivation medium used	suter without tyrosine

[Ref.: #69332]	Pigment production	no
[Ref.: #69332]	Pigment name	Melanin
[Ref.: #69332]	Pigment production	yes
[Ref.: #69332]	Pigmentation color	Brown beige (1011), golden yellow (1004)
[Ref.: #69332]	Pigment name	soluble pigment

[Ref.: #69332]	Multicellular complex forming ability	no
[Ref.: #69332]	Multicellular complex name	Aerial mycelium
[Ref.: #69332]	Medium Name (multicellularity)	ISP 2

[Ref.: #69332]	Multicellular complex forming ability	yes
[Ref.: #69332]	Multicellular complex name	Aerial mycelium
[Ref.: #69332]	Multicellular complex color	Stone grey (7030), light grey (7035)
[Ref.: #69332]	Medium Name (multicellularity)	ISP 3

[Ref.: #69332]	Multicellular complex forming ability	no
[Ref.: #69332]	Multicellular complex name	Aerial mycelium
[Ref.: #69332]	Medium Name (multicellularity)	ISP 4

[Ref.: #69332]	Multicellular complex forming ability	no
[Ref.: #69332]	Multicellular complex name	Aerial mycelium
[Ref.: #69332]	Medium Name (multicellularity)	ISP 5

[Ref.: #69332]	Multicellular complex forming ability	no
[Ref.: #69332]	Multicellular complex name	Aerial mycelium
[Ref.: #69332]	Medium Name (multicellularity)	ISP 6

[Ref.: #69332]	Multicellular complex forming ability	no
[Ref.: #69332]	Multicellular complex name	Aerial mycelium
[Ref.: #69332]	Medium Name (multicellularity)	ISP 7

[Ref.: #69332]	Multicellular complex forming ability	no
[Ref.: #69332]	Multicellular complex name	Aerial mycelium
[Ref.: #69332]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69332]	Multicellular complex forming ability	no
[Ref.: #69332]	Multicellular complex name	Aerial mycelium
[Ref.: #69332]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

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Caption:

Medium 554 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #66995]			growth	28 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69332]		NaCl		growth	0-5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69332]	arabinose ChEBI	+	growth
[Ref.: #69332]	cellulose ChEBI	+/-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69332]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69332]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69332]	inositol ChEBI	+	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69332]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69332]	raffinose ChEBI	+	growth
[Ref.: #69332]	rhamnose ChEBI	+	growth
[Ref.: #69332]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69332]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69332]	3825	-	-	+	+	-	-	-	+	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69332]	6009	not determinedn.d.	+	+	+/-	+/-	+	+	+/-	-	-	+	+	+	-	-	-	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66995]	Sample type/isolated from	soil
[Ref.: #66995]	Geographic location (country and/or sea, region)	Hacibekta (38° 58' 07.1'' N, 34° 34' 53.4'' E)
[Ref.: #66995]	Country	Turkey
[Ref.: #66995]	Country ISO 3 Code	TUR
[Ref.: #66995]	Continent	Asia
[Ref.: #66995]	Geographic location	38.9686°/34.5815°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66995]	Streptomyces sp. strain HC44 16S ribosomal RNA gene, partial sequence	KX608881	1482	ENA	1931 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces scabichelini HC44	GCA_011045015	contig	GenBank	2711217 tax ID	*

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GC-content

69.8 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces scabichelini HC44 NCBI: GCA_011045015.1
[Ref.: #69480]	motile	no	93.951	no
[Ref.: #69480]	flagellated	no	97.9	no
[Ref.: #69480]	gram-positive	yes	90.47	no
[Ref.: #69480]	anaerobic	no	99.354	no
[Ref.: #69480]	aerobic	yes	95.079	no
[Ref.: #69480]	halophile	no	94.007	no
[Ref.: #69480]	spore-forming	yes	94.777	no
[Ref.: #69480]	thermophile	no	98.224	yes
[Ref.: #69480]	glucose-util	yes	90.09	no
[Ref.: #69480]	glucose-ferment	no	90.102	no

Availability in culture collections External links

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Culture collection no.

DSM 106874, KCTC 39872

[Ref.: #112367]

SI-ID 404253

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces scabichelini sp. nov., isolated from soil.	Gencbay T, Saygin H, Guven K, Topkara AR, Saricaoglu S, Sahin N, Isik K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004639	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66995

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106874

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69332

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#112367

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404253.1 )

* These data were automatically processed and therefore are not curated

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