Name: Sulfurimicrobium lacus skT11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159994

Type strain:

Species: Sulfurimicrobium lacus

Strain Designation: skT11

Culture col. no.: DSM 110711, NBRC 114323

Strain history: <- H. Kojima, Hokkaido University, Sapporo, Japan; skT11

NCBI tax ID(s): 2715678 (species)

SI-ID 402275

DSM 110711

Section

Sulfurimicrobium lacus skT11 is a mesophilic, motile bacterium that was isolated from lake water.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Nitrosomonadales*
	Family	*Sulfuricellaceae*
	Genus	*Sulfurimicrobium*
	Species	**Sulfurimicrobium lacus**
	Full Scientific Name (LPSN)	Sulfurimicrobium lacus Kojima et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %99.407

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66898]

Culture medium

SULFURICELLA MEDIUM (DSMZ Medium 1277)

[Ref.: #66898]

Culture medium growth

[Ref.: #66898]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66898]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66898]			growth	28 °C

[Ref.: #66898]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.947
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66898]	Sample type/isolated from	lake water
[Ref.: #66898]	Geographic location (country and/or sea, region)	Yamanashi, Hokuto, Lake Mizugaki
[Ref.: #66898]	Country	Japan
[Ref.: #66898]	Country ISO 3 Code	JPN
[Ref.: #66898]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC533074 (>99% sequence identity) for Sulfurimicrobium lacus subclade from Microbeatlas

Aquatic Samples	1221
Soil Samples	438
Animal Samples	61
Plant Samples	31
Total Samples	1751

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66898]	Sulfurimicrobium lacus skT11 gene for 16S ribosomal RNA, partial sequence	LC533074	1461	ENA	2715678 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sulfurimicrobium lacus skT11	GCA_011764585	complete	GenBank	2715678 tax ID	*
[Ref.: #66792]	Sulfurimicrobium lacus skT11	2898025466	complete	JGI IMG/M	2715678 tax ID	*

[Ref.: #66898]

GC-content

60.2 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sulfurimicrobium lacus skT11 NCBI: GCA_011764585.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sulfurimicrobium lacus skT11 NCBI: GCA_011764585.1
[Ref.: #69480]	motile	yes	88.191	no
[Ref.: #69480]	flagellated	yes	57.405	no
[Ref.: #69480]	gram-positive	no	99.208	no
[Ref.: #69480]	anaerobic	no	72.588	no
[Ref.: #69480]	aerobic	no	95.969	no
[Ref.: #69480]	halophile	no	94.945	no
[Ref.: #69480]	spore-forming	no	92.622	no
[Ref.: #69480]	glucose-util	no	61.914	no
[Ref.: #69480]	thermophile	no	93.82	yes
[Ref.: #69480]	glucose-ferment	no	90.09	no

Availability in culture collections External links

[Ref.: #66898]

Culture collection no.

DSM 110711, NBRC 114323

[Ref.: #112276]

SI-ID 402275

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sulfurimicrobium lacus gen. nov., sp. nov., a sulfur oxidizer isolated from lake water, and review of the family Sulfuricellaceae to show that it is not a later synonym of Gallionellaceae.	Kojima H, Kanda M, Umezawa K, Fukui M	Arch Microbiol	10.1007/s00203-020-02029-0	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66898

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110711

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112276

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402275.1 )

* These data were automatically processed and therefore are not curated

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