Acidiferrimicrobium australe (DSM 106828, RGM 2506, USS-CCA1)

Name: Acidiferrimicrobium australe (DSM 106828, RGM 2506, USS-CCA1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159903

Type strain

Strain Designation RGM 2506, USS-CCA1

Culture col. no. DSM 106828 RGM 2506 USS-CCA1

NCBI tax ID(s) 2664430

Special Collections DSMZ

History <- I. Nancucheo, Facultad de Ingeniería y Tecnología, Universidad San Sebastián; USS-CCA1 <- I. Nancucheo, Facultad de Ingeniería y Tecnología, Universidad San Sebastián; USS-CCA1

Links

Acidiferrimicrobium australe RGM 2506 is a bacterium that was isolated from Solid plates.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 400332

DSM 106828

@ref 20215

Last LPSN update 2026-02-09 11:38:45

Domain Bacteria

Phylum Actinomycetota

Class Acidimicrobiia

Order Acidimicrobiales

Family Acidimicrobiaceae

Genus Acidiferrimicrobium

Species Acidiferrimicrobium australe

Full scientific name Acidiferrimicrobium australe González et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	100
125439		93.3

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66807	ACTINOBACTERIA MEDIUM (DSMZ Medium 1688)		Medium recipe at MediaDive	Name: ACTINOBACTERIA MEDIUM (DSMZ Medium 1688) Composition: Glucose 0.9 g/l MgSO4 x 7 H2O 0.5 g/l (NH4)2SO4 0.45 g/l Na2SO4 0.15 g/l Yeast extract 0.1 g/l KCl 0.05 g/l KH2PO4 0.05 g/l Ca(NO3)2 x 4 H2O 0.015 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
66807	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99

Spore formation

@ref	Spore formation	Confidence
125439		96

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68368	17634 ChEBI	D-glucose	-	fermentation	from API 20E
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68368	16899 ChEBI	D-mannitol	-	fermentation	from API 20E
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68368	17632 ChEBI	nitrate	-	reduction	from API 20E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	17997 ChEBI	dinitrogen	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68369	35581 ChEBI	indole	from API 20NE
68368	35581 ChEBI	indole	from API 20E
68368	16301 ChEBI	nitrite	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68369	35581 ChEBI	indole		-	from API 20NE
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68369	gelatinase	-		from API 20NE
68368	gelatinase	-		from API 20E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68369	urease	-	3.5.1.5	from API 20NE
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	+		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
66807	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
66807	-	-	-	+/-	-	+	+	+/-	-	-	-	-	-	-	-	-	-	-	-	-
66807	-	-	+/-	+/-	-	+	+	+/-	+/-	+/-	+	+/-	-	+/-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
66807	-	-	-	-	-	+/-	-	+	-	-	-	-	-	-	-	-	-	-	+/-	-	not determinedn.d.

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
66807	Solid plates	Curanilahue (37° 35' 49.9'' N, 73° 13' 21,9'' W)	Chile	CHL	Middle and South America	-37.5972	-73.2229 -37.5972/-73.2229

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID
66792	ASM969711v1 assembly for Acidiferrimicrobium australe USS-CCA1	contig	GCA_009697115	2664430.3	2664430

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acidiferrimicrobium australe USS-CCA1
NCBI: GCA_009697115

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	96.00	no
125439	motility	BacteriaNetⓘ	no	93.30	no
125439	gram_stain	BacteriaNetⓘ	positive	100.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acidiferrimicrobium australe USS-CCA1
NCBI: GCA_009697115.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	78.53	no
125438	anaerobic	anaerobicⓘ	no	83.35	no
125438	aerobic	aerobicⓘ	yes	77.07	no
125438	spore-forming	spore-formingⓘ	no	57.53	no
125438	thermophilic	thermophileⓘ	no	91.39	no
125438	flagellated	motile2+ⓘ	no	67.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acidiferrimicrobium australe gen. nov., sp. nov., an acidophilic and obligately heterotrophic, member of the Actinobacteria that catalyses dissimilatory oxido-reduction of iron isolated from metal-rich acidic water in Chile.	Gonzalez D, Huber KJ, Tindall B, Hedrich S, Rojas-Villalobos C, Quatrini R, Dinamarca MA, Ibacache-Quiroga C, Schwarz A, Canales C, Nancucheo I	Int J Syst Evol Microbiol	10.1099/ijsem.0.004179	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66807	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106828
#68368	Automatically annotated from API 20E .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acidiferrimicrobium australe (DSM 106828, RGM 2506, USS-CCA1)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

API zym

API 20NE

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_009697115

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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