Name: Bacteroides thetaiotaomicron E50 (VPI 5482)
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1599

Type strain:

Species: Bacteroides thetaiotaomicron

Strain Designation: E50 (VPI 5482), VPI-5482

Culture col. no.: DSM 2079, ATCC 29148, NCTC 10582, CCUG 10774, CIP 104206, VPI 5482, JCM 5827, CGMCC 1.5132

Strain history: ATCC 29148 <-- E. P. Cato VPI 5482 <-- H. Werner E 50.

NCBI tax ID(s): 818 (species)

SI-ID 39378

ATCC 29148, CIP 104206, NCTC 10582, CCUG 10774, DSM 2079, JCM 5827, VTT E-001738, LMG 28903

Other strains from Bacteroides thetaiotaomicron

B. thetaiotaomicron DSM 2255, ATCC 29741, WAL 2926, ...
B. thetaiotaomicron CCUG 34419
B. thetaiotaomicron CCUG 38386 A
B. thetaiotaomicron CCUG 38792
B. thetaiotaomicron CCUG 45196
B. thetaiotaomicron CCUG 68684
B. thetaiotaomicron CCUG 68702
B. thetaiotaomicron CCUG 68746
B. thetaiotaomicron H3_25, DSM 108160
B. thetaiotaomicron H5_3, DSM 108161
B. thetaiotaomicron HM-168, 1/1/14, DSM 24846

Section

Bacteroides thetaiotaomicron E50 is an anaerobe, mesophilic bacterium that was isolated from human faeces.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Bacteroidaceae*
	Genus	*Bacteroides*
	Species	**Bacteroides thetaiotaomicron**
	Full Scientific Name (LPSN)	Bacteroides thetaiotaomicron (Distaso 1912) Castellani and Chalmers 1919 (Approved Lists 1980)

	Synonym	"Bacteroides* fragilis subsp. thetaiotaomicron"*
	Synonym	"Bacillus* thetaiotaomicron"*

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #69480]	Motility	no Confidence in %91.919

[Ref.: #714]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #714]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #714]

Culture medium growth

[Ref.: #714]

Culture medium link

Medium recipe at MediaDive

[Ref.: #714]

Culture medium composition

expand / minimize

[Ref.: #714]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #714]

Culture medium growth

[Ref.: #714]

Culture medium link

Medium recipe at MediaDive

[Ref.: #714]

Culture medium composition

expand / minimize

[Ref.: #41048]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #41048]

Culture medium growth

[Ref.: #41048]

Culture medium composition

expand / minimize

[Ref.: #42081]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #42081]

Culture medium growth

[Ref.: #42081]

Culture medium composition

expand / minimize

[Ref.: #714]

Culture medium

FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)

[Ref.: #714]

Culture medium growth

[Ref.: #714]

Culture medium link

Medium recipe at MediaDive

[Ref.: #714]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #714]	growth	37 °C
[Ref.: #41048]	growth	37 °C
[Ref.: #42081]	growth	37 °C
[Ref.: #45331]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #714]	Temperature range	mesophilic
[Ref.: #41048]	Temperature range	mesophilic
[Ref.: #42081]	Temperature range	mesophilic
[Ref.: #45331]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #714]	Oxygen tolerance	anaerobe
[Ref.: #45331]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.322

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.989

[Ref.: #67770]

Observation

quinones: MK-10, MK-11

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68367]	cellobiose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-glucose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-mannose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	D-mannose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68367]	D-xylose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	esculin ChEBI	+	hydrolysis	* from API 20A
[Ref.: #68367]	L-arabinose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	L-glutamate ChEBI	+	degradation	* from API rID32A
[Ref.: #68367]	L-rhamnose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	lactose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	maltose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	melezitose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68367]	raffinose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	raffinose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68367]	sucrose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	trehalose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	tryptophan ChEBI	+	energy source	* from API 20A, API rID32A
[Ref.: #68367]	urea ChEBI	-	hydrolysis	* from API 20A, API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68367]		indole ChEBI	yes	* from API 20A, API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	+	* from API rID32A, API 20A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	+	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	+	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A, API 20A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	+	4.1.1.15	* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68380]	leucine arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	+	4.1.99.1	* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A, API 20A
	Only first 10 entries are displayed. Click here to see all.

API® 20A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Indole productionIND	Urease/urea hydrolysisURE	Acid from D-glucoseGLU	Acid from D-mannitolMAN	Acid from lactoseLAC	Acid from sucroseSAC	Acid from maltoseMAL	Acid from salicinSAL	Acid from D-xyloseXYL	Acid from L-arabinoseARA	Gelatinase/gelatin hydrolysisGEL	Esculin hydrolysis/beta-glucosidaseESC	Acid from glycerolGLY	Acid from cellobioseCEL	Acid from D-mannoseMNE	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from sorbitolSOR	Acid from L-rhamnoseRHA	Acid from trehaloseTRE	CatalaseCAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
[Ref.: #714]	2000	+	-	+	-	+	+	+	-	+	+	-	+	-	+	+	+	+	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #714]	1999	+	-	+	+	+	+	+	+	+	+	-	+	+/-	+	+	+	+	+/-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #714]	1998	+	-	+	-	+	+	+	-	+	+	-	+	-	+	+	+	+	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #714]	1997	+	-	+	-	+	+	+	-	+	+	+	+	-	+	+	+	+	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #714]	13286	-	-	+	+	-	+	+	+	-	+	+	+	+	+	-	+	+	+	-	+	+/-	+	-	-	+	-	+/-	+/-	-
[Ref.: #714]	12118	-	-	+	+	-	+	+	+	-	+	+	+	+	+	-	+	+	+	-	+	-	+	-	-	+	-	-	+	-
[Ref.: #714]	12119	-	-	+	+	-	+	+	+	-	+	+	+	+	+	-	+	+	+	-	+	-	+	-	-	+	-	-	-	-
[Ref.: #714]	12120	-	-	+	+	-	+	+	+	-	+	+	+	+	+	-	+	+	+	-	+	-	+	-	-	+	-	-	-	-
[Ref.: #714]	12121	-	-	+	+	-	+	+	+	-	+	+	+	+	+	-	+	+	+	-	+	-	+	-	-	+	-	-	-	-
[Ref.: #714]	12122	-	-	+	+	-	+	+	+	-	+	+	+	+	+	-	+	+	+	-	+	-	+	-	-	+	-	+	+	-
[Ref.: #714]	12123	-	-	+	+	-	+	+	+	-	+	+	+	+	+	-	+	+	+	-	+	+/-	+	-	-	+	-	+/-	+/-	-
[Ref.: #714]	12958	-	-	+	+	-	+	+	+	-	+	+	+	+	+	-	+	+	+	-	+	+/-	+	-	-	+	-	+/-	-	-
[Ref.: #714]	13109	-	-	+	+	-	+	+	+	-	+	+	+	+	+	-	+	+	+	-	+	+/-	+	-	-	+	-	+/-	+/-	-
[Ref.: #714]	13421	-	-	+	+	-	+	+	+	-	+	+	+	+	+	-	+	+	+	-	+	+/-	+	-	+/-	+	-	+	+/-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #714]	Sample type/isolated from	human faeces

[Ref.: #45331]	Sample type/isolated from	Human feces

[Ref.: #67770]	Sample type/isolated from	Human feces
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #714]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bacteroides thetaiotaomicron 16S ribosomal RNA gene, partial sequence	M58763	1482	ENA	818 tax ID
[Ref.: #67770]	Bacteroides thetaiotaomicron gene for 16S ribosomal RNA, partial sequence, strain: JCM 5827	AB510710	1461	ENA	818 tax ID
[Ref.: #714]	Bacteroides thetaiotaomicron VPI-5482, complete genome	AE015928	6260361	ENA	226186 tax ID
[Ref.: #20218]	Bacteroides thetaiotaomicron strain DSM 2079 16S ribosomal RNA gene, partial sequence	HQ012026	931	ENA	818 tax ID	*
[Ref.: #20218]	Bacteroides thetaiotaomicron 16S-23S ribosomal RNA intergenic spacer region, partial sequence	AF172710	523	ENA	818 tax ID	*
[Ref.: #20218]	Bacteroides thetaiotaomicron (ATCC 29148) 16S ribosomal RNA	L16489	1475	ENA	818 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bacteroides thetaiotaomicron DSM 2079	GCA_028539425	contig	GenBank	818 tax ID	*
[Ref.: #66792]	Bacteroides thetaiotaomicron VPI-5482	GCA_000011065	complete	GenBank	226186 tax ID	*
[Ref.: #66792]	Bacteroides thetaiotaomicron VPI-5482	GCA_002959695	contig	GenBank	818 tax ID	*
[Ref.: #66792]	Bacteroides thetaiotaomicron NCTC10582	GCA_900445595	contig	GenBank	818 tax ID	*
[Ref.: #66792]	Bacteroides thetaiotaomicron VPI-5482	GCA_020179495	contig	GenBank	818 tax ID	*
[Ref.: #66792]	Bacteroides thetaiotaomicron VPI-5482	226186.70	wgs	PATRIC	226186 tax ID	*

[Ref.: #714]	GC-content	42.0 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #714]	GC-content	42.9 mol%	sequence analysis
[Ref.: #67770]	GC-content	42 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bacteroides thetaiotaomicron DSM 2079 NCBI: GCA_014131755.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacteroides thetaiotaomicron DSM 2079 NCBI: GCA_014131755.1
[Ref.: #69480]	motile	no	91.904	no
[Ref.: #69480]	flagellated	no	96.945	no
[Ref.: #69480]	gram-positive	no	97.103	no
[Ref.: #69480]	anaerobic	yes	94.443	yes
[Ref.: #69480]	aerobic	no	96.026	yes
[Ref.: #69480]	halophile	no	90.279	no
[Ref.: #69480]	spore-forming	no	94.57	no
[Ref.: #69480]	glucose-util	yes	87.734	no
[Ref.: #69480]	thermophile	no	99.646	yes
[Ref.: #69480]	glucose-ferment	yes	71	no

Availability in culture collections External links

[Ref.: #714]

Culture collection no.

DSM 2079, ATCC 29148, NCTC 10582, CCUG 10774, CIP 104206, VPI 5482, JCM 5827, CGMCC 1.5132

[Ref.: #71244]

SI-ID 39378

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Modification to increase the thermostability and catalytic efficiency of alpha-L-rhamnosidase from Bacteroides thetaiotaomicron and high-level expression.	Lu C, Dong Y, Ke K, Zou K, Wang Z, Xiao W, Pei J, Zhao L	Enzyme Microb Technol	10.1016/j.enzmictec.2022.110040	2022	*
Metabolism	Bacteroides thetaiotaomicron uses a widespread extracellular DNase to promote bile-dependent biofilm formation.	Bechon N, Mihajlovic J, Lopes AA, Vendrell-Fernandez S, Deschamps J, Briandet R, Sismeiro O, Martin-Verstraete I, Dupuy B, Ghigo JM	Proc Natl Acad Sci U S A	10.1073/pnas.2111228119	2022	*
Metabolism	Lipidomics Analysis of Outer Membrane Vesicles and Elucidation of the Inositol Phosphoceramide Biosynthetic Pathway in Bacteroides thetaiotaomicron.	Sartorio MG, Valguarnera E, Hsu FF, Feldman MF	Microbiol Spectr	10.1128/spectrum.00634-21	2022	*
Metabolism	Rational Design for Broadened Substrate Specificity and Enhanced Activity of a Novel Acetyl Xylan Esterase from Bacteroides thetaiotaomicron.	Wang L, Han X, Wang Y, Wei X, Liu S, Shao S, Yang S, Sun L, Xin F	J Agric Food Chem	10.1021/acs.jafc.1c00750	2021	*
Biotechnology	GABA Production by Human Intestinal Bacteroides spp.: Prevalence, Regulation, and Role in Acid Stress Tolerance.	Otaru N, Ye K, Mujezinovic D, Berchtold L, Constancias F, Cornejo FA, Krzystek A, de Wouters T, Braegger C, Lacroix C, Pugin B	Front Microbiol	10.3389/fmicb.2021.656895	2021	*
Pathogenicity	Endotoxin Producers Overgrowing in Human Gut Microbiota as the Causative Agents for Nonalcoholic Fatty Liver Disease.	Fei N, Bruneau A, Zhang X, Wang R, Wang J, Rabot S, Gerard P, Zhao L	mBio	10.1128/mBio.03263-19	2020	*
Phylogeny	Bifidobacterium adolescentis P2P3, a Human Gut Bacterium Having Strong Non-Gelatinized Resistant Starch-Degrading Activity.	Jung DH, Kim GY, Kim IY, Seo DH, Nam YD, Kang H, Song Y, Park CS	J Microbiol Biotechnol	10.4014/jmb.1909.09010	2019	*
Metabolism	Single cell fluorescence imaging of glycan uptake by intestinal bacteria.	Hehemann JH, Reintjes G, Klassen L, Smith AD, Ndeh D, Arnosti C, Amann R, Abbott DW	ISME J	10.1038/s41396-019-0406-z	2019	*
Pathogenicity	A Putative Type V Pilus Contributes to Bacteroides thetaiotaomicron Biofilm Formation Capacity.	Mihajlovic J, Bechon N, Ivanova C, Chain F, Almeida A, Langella P, Beloin C, Ghigo JM	J Bacteriol	10.1128/JB.00650-18	2019	*
Metabolism	Characterization of a alpha-l-rhamnosidase from Bacteroides thetaiotaomicron with high catalytic efficiency of epimedin C.	Wu T, Pei J, Ge L, Wang Z, Ding G, Xiao W, Zhao L	Bioorg Chem	10.1016/j.bioorg.2018.08.004	2018	*
Metabolism	The Biosynthesis of Lipooligosaccharide from Bacteroides thetaiotaomicron.	Jacobson AN, Choudhury BP, Fischbach MA	mBio	10.1128/mBio.02289-17	2018	*
Pathogenicity	Comprehensive evaluation of the bactericidal activities of free bile acids in the large intestine of humans and rodents.	Watanabe M, Fukiya S, Yokota A	J Lipid Res	10.1194/jlr.M075143	2017	*
Metabolism	Anaerobic utilization of Fe(III)-xenosiderophores among Bacteroides species and the distinct assimilation of Fe(III)-ferrichrome by Bacteroides fragilis within the genus.	Rocha ER, Krykunivsky AS	Microbiologyopen	10.1002/mbo3.479	2017	*
Metabolism	The microbiota shifts the iron sensing of intestinal cells.	Deschemin JC, Noordine ML, Remot A, Willemetz A, Afif C, Canonne-Hergaux F, Langella P, Karim Z, Vaulont S, Thomas M, Nicolas G	FASEB J	10.1096/fj.15-276840	2015	*
Metabolism	The gut bacterium Bacteroides thetaiotaomicron influences the virulence potential of the enterohemorrhagic Escherichia coli O103:H25.	Iversen H, Lindback T, L'Abee-Lund TM, Roos N, Aspholm M, Stenfors Arnesen L	PLoS One	10.1371/journal.pone.0118140	2015	*
Genetics	Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase.	Sheydina A, Eberhardt RY, Rigden DJ, Chang Y, Li Z, Zmasek CC, Axelrod HL, Godzik A	BMC Bioinformatics	10.1186/1471-2105-15-112	2014	*
Biotechnology	Degradation of Fructans and Production of Propionic Acid by Bacteroides thetaiotaomicron are Enhanced by the Shortage of Amino Acids.	Adamberg S, Tomson K, Vija H, Puurand M, Kabanova N, Visnapuu T, Jogi E, Alamae T, Adamberg K	Front Nutr	10.3389/fnut.2014.00021	2014	*
Proteome	Filling out the structural map of the NTF2-like superfamily.	Eberhardt RY, Chang Y, Bateman A, Murzin AG, Axelrod HL, Hwang WC, Aravind L	BMC Bioinformatics	10.1186/1471-2105-14-327	2013	*
Metabolism	Discovery of beta-1,4-D-mannosyl-N-acetyl-D-glucosamine phosphorylase involved in the metabolism of N-glycans.	Nihira T, Suzuki E, Kitaoka M, Nishimoto M, Ohtsubo K, Nakai H	J Biol Chem	10.1074/jbc.M113.469080	2013	*
Enzymology	Bacteroides thetaiotaomicron VPI-5482 glycoside hydrolase family 66 homolog catalyzes dextranolytic and cyclization reactions.	Kim YM, Yamamoto E, Kang MS, Nakai H, Saburi W, Okuyama M, Mori H, Funane K, Momma M, Fujimoto Z, Kobayashi M, Kim D, Kimura A	FEBS J	10.1111/j.1742-4658.2012.08698.x	2012	*
Phylogeny	Bacteroides reticulotermitis sp. nov., isolated from the gut of a subterranean termite (Reticulitermes speratus).	Sakamoto M, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijs.0.040931-0	2012	*
Pathogenicity	A conformational switch in the active site of BT_2972, a methyltransferase from an antibiotic resistant pathogen B. thetaiotaomicron.	Kumar V, Sivaraman J	PLoS One	10.1371/journal.pone.0027543	2011	*
Enzymology	The X-ray crystallographic structure and specificity profile of HAD superfamily phosphohydrolase BT1666: comparison of paralogous functions in B. thetaiotaomicron.	Lu Z, Dunaway-Mariano D, Allen KN	Proteins	10.1002/prot.23137	2011	*
Phylogeny	Bacteroides faecis sp. nov., isolated from human faeces.	Kim MS, Roh SW, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.020024-0	2009	*
Pathogenicity	Use of a Bacteroides thetaiotaomicron-specific alpha-1-6, mannanase quantitative PCR to detect human faecal pollution in water.	Yampara-Iquise H, Zheng G, Jones JE, Carson CA	J Appl Microbiol	10.1111/j.1365-2672.2008.03895.x	2008	*
Enzymology	The catalytic scaffold of the haloalkanoic acid dehalogenase enzyme superfamily acts as a mold for the trigonal bipyramidal transition state.	Lu Z, Dunaway-Mariano D, Allen KN	Proc Natl Acad Sci U S A	10.1073/pnas.0710800105	2008	*
Metabolism	Crystal structures of two novel dye-decolorizing peroxidases reveal a beta-barrel fold with a conserved heme-binding motif.	Zubieta C, Krishna SS, Kapoor M, Kozbial P, McMullan D, Axelrod HL, Miller MD, Abdubek P, Ambing E, Astakhova T, Carlton D, Chiu HJ, Clayton T, Deller MC, Duan L, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Hampton E, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kumar A, Marciano D, Morse AT, Nigoghossian E, Okach L, Oommachen S, Reyes R, Rife CL, Schimmel P, van den Bedem H, Weekes D, White A, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA	Proteins	10.1002/prot.21550	2007	*
Metabolism	Characterization of Bacteroides fragilis hemolysins and regulation and synergistic interactions of HlyA and HlyB.	Robertson KP, Smith CJ, Gough AM, Rocha ER	Infect Immun	10.1128/IAI.74.4.2304-2316.2006	2006	*
Enzymology	HAD superfamily phosphotransferase substrate diversification: structure and function analysis of HAD subclass IIB sugar phosphatase BT4131.	Lu Z, Dunaway-Mariano D, Allen KN	Biochemistry	10.1021/bi050009j	2005	*
Genetics	Genetic and structural analysis of the Bacteroides conjugative transposon CTn341.	Bacic M, Parker AC, Stagg J, Whitley HP, Wells WG, Jacob LA, Smith CJ	J Bacteriol	10.1128/JB.187.8.2858-2869.2005	2005	*
Phylogeny	Identification of Bacteroides thetaiotaomicron on the basis of an unexpected specific amplicon of universal 16S ribosomal DNA PCR.	Teng LJ, Hsueh PR, Huang YH, Tsai JC	J Clin Microbiol	10.1128/JCM.42.4.1727-1730.2004	2004	*
Metabolism	A heat labile soluble factor from Bacteroides thetaiotaomicron VPI-5482 specifically increases the galactosylation pattern of HT29-MTX cells.	Freitas M, Cayuela C, Antoine JM, Piller F, Sapin C, Trugnan G	Cell Microbiol	10.1046/j.1462-5822.2001.00113.x	2001	*
Phylogeny	[Use of cell-surface antigens of Bacteroides thetaiotaomicron in the passive hemagglutination test and in the inhibition of passive hemagglutination].	Rokosz A, Meisel-Mikolajczyk F	Med Dosw Mikrobiol		1995	*
Metabolism	Metabolism of 1,4-dinitro-2-methylpyrrole, a mutagen formed by a sorbic acid-nitrite reaction, by intestinal bacteria.	Shu YZ, Kingston DG, Van Tassell RL, Wilkins TD	Environ Mol Mutagen	10.1002/em.2850170307	1991	*
Pathogenicity	Growth of succinate consumer Dialister hominis is supported by Bacteroides thetaiotaomicron.	Sakamoto M, Ikeyama N, Iino T, Ohkuma M	Anaerobe	10.1016/j.anaerobe.2022.102642	2022	*
	Capsular Polysaccharide Cross-Regulation Modulates Bacteroides thetaiotaomicron Biofilm Formation.	Bechon N, Mihajlovic J, Vendrell-Fernandez S, Chain F, Langella P, Beloin C, Ghigo JM	mBio	10.1128/mBio.00729-20	2020	*
	Intestinal IgA Regulates Expression of a Fructan Polysaccharide Utilization Locus in Colonizing Gut Commensal Bacteroides thetaiotaomicron.	Joglekar P, Ding H, Canales-Herrerias P, Pasricha PJ, Sonnenburg JL, Peterson DA	mBio	10.1128/mBio.02324-19	2019	*
	Characterization of a glycoside hydrolase family 78 alpha-l-rhamnosidase from Bacteroides thetaiotaomicron VPI-5482 and identification of functional residues.	Li B, Ji Y, Li Y, Ding G	3 Biotech	10.1007/s13205-018-1139-9	2018	*
	Evaluative profiling of arsenic sensing and regulatory systems in the human microbiome project genomes.	Isokpehi RD, Udensi UK, Simmons SS, Hollman AL, Cain AE, Olofinsae SA, Hassan OA, Kashim ZA, Enejoh OA, Fasesan DE, Nashiru O	Microbiol Insights	10.4137/MBI.S18076	2014	*
	Carbohydrate utilization patterns and substrate preferences in Bacteroides thetaiotaomicron.	Degnan BA, Macfarlane GT	Anaerobe	10.1016/s1075-9964(95)80392-0	1995	*

References

#714	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2079

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41048 ; Curators of the CIP;
#42081 ; Curators of the CIP;
#45331 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 10774

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68367

Automatically annotated from API 20A .

#68380

Automatically annotated from API rID32A .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71244

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39378.1 )

* These data were automatically processed and therefore are not curated

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Bacteroides thetaiotaomicron DSM 2079

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