Albibacillus kandeliae (MCCC 1K03284, DSM 104293, J95)

Name: Albibacillus kandeliae (MCCC 1K03284, DSM 104293, J95)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159879

Type strain

Strain Designation J95

Culture col. no. MCCC 1K03284 DSM 104293 J95

NCBI tax ID(s) 2174228

Special Collections DSMZ Literature strains

Albibacillus kandeliae J95 is a Gram-negative, motile, rod-shaped bacterium that forms circular colonies and was isolated from rhizosphere soil of a mangrove plant Kandelia candel.

Gram-negative motile rod-shaped colony-forming genome sequence 16S sequence Bacteria

Name and taxonomic classification

Culture Collection Numbers

MCCC 1K03284 DSM 104293 J95

@ref 20215

Last LPSN update 2026-02-09 11:38:45

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Albibacillus

Species Albibacillus kandeliae

Full scientific name Albibacillus kandeliae (Zhang et al. 2018) Hördt et al. 2020

Synonyms (1)

Ruegeria kandeliae

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
66630	negative	1.3-3.3 µm	0.5-0.7 µm	rod-shaped
125438	negative					98.333

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
66630	0.4-0.8 mm	cream	circular	2 days	Marine agar (MA)

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition
66630	Marine agar (MA)
66630	Reasoner's 2A agar (R2A)		added 17 g/l sea salt

Culture temp

@ref	Growth	Type	Temperature (°C)
66630	positive	growth	10-40
66630	positive	optimum	30-37

Culture pH

@ref	Ability	Type	PH	PH range
66630	positive	optimum	6.0-7.0
66630	positive	growth	5-8.5	alkaliphile

Physiology and metabolism

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
66630		NaCl	positive	growth	0-9.0 %(w/v)
66630	slightly halophilic	NaCl	positive	optimum	0.5-3 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66630	17128 ChEBI	adipate	+	assimilation
66630	17634 ChEBI	D-glucose	+	assimilation
66630	16899 ChEBI	D-mannitol	+	assimilation
66630	16024 ChEBI	D-mannose	-	assimilation
66630	27689 ChEBI	decanoate	-	assimilation
66630	4853 ChEBI	esculin	-	hydrolysis
66630	5291 ChEBI	gelatin	-	hydrolysis
66630	17234 ChEBI	glucose	-	builds acid from
66630	30849 ChEBI	L-arabinose	+	assimilation
66630	16467 ChEBI	L-arginine	+	hydrolysis
66630	25115 ChEBI	malate	+	assimilation
66630	17306 ChEBI	maltose	-	assimilation
66630	59640 ChEBI	N-acetylglucosamine	-	assimilation
66630	17632 ChEBI	nitrate	+	reduction
66630	18401 ChEBI	phenylacetate	+	assimilation
66630	32032 ChEBI	potassium gluconate	+	assimilation
66630	53258 ChEBI	sodium citrate	+	assimilation
66630	53424 ChEBI	tween 20	-	hydrolysis
66630	53423 ChEBI	tween 40	-	hydrolysis
66630	53425 ChEBI	tween 60	-	hydrolysis
66630	53426 ChEBI	tween 80	-	hydrolysis
66630	16199 ChEBI	urea	+	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
66630	2637	Amikacin	30 µg (disc)
66630	28971	ampicillin	10 µg (disc)
66630	3534	cephalexin	30 µg (disc)
66630	17698	chloramphenicol	30 µg (disc)
66630	100241	ciprofloxacin		5 µg (disc)
66630	3745	clindamycin		2 µg (disc)
66630	48923	erythromycin	15 µg (disc)
66630	17833	gentamicin	10 µg (disc)
66630	6104	kanamycin	30 µg (disc)
66630	100147	nalidixic acid		30 µg (disc)
66630	7507	neomycin	30 µg (disc)
66630	100246	norfloxacin	10 µg (disc)
66630	28368	novobiocin		5 µg (disc)
66630	18208	penicillin g	10 Unit (disc)
66630	8309	polymyxin b	30 Unit (disc)
66630	28077	rifampicin	5 µg (disc)
66630	17076	streptomycin	10 µg (disc)
66630	27902	tetracycline	30 µg (disc)
66630	28864	tobramycin	10 µg (disc)
66630	28001	vancomycin		30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
66630	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
66630	acid phosphatase	+	3.1.3.2
66630	alkaline phosphatase	+	3.1.3.1
66630	alpha-chymotrypsin	-	3.4.21.1
66630	alpha-fucosidase	-	3.2.1.51
66630	alpha-galactosidase	+/-	3.2.1.22
66630	alpha-glucosidase	-	3.2.1.20
66630	alpha-mannosidase	-	3.2.1.24
66630	beta-galactosidase	-	3.2.1.23
66630	beta-glucosidase	-	3.2.1.21
66630	beta-glucuronidase	-	3.2.1.31
66630	catalase	+	1.11.1.6
66630	cystine arylamidase	-	3.4.11.3
66630	cytochrome oxidase	+	1.9.3.1
66630	esterase (C 4)	+
66630	esterase Lipase (C 8)	+
66630	leucine arylamidase	+	3.4.11.1
66630	lipase (C 14)	-
66630	N-acetyl-beta-glucosaminidase	-	3.2.1.52
66630	naphthol-AS-BI-phosphohydrolase	+
66630	trypsin	-	3.4.21.4
66630	valine arylamidase	+/-

Fatty acid profile

Metadata FA analysis

@ref

66630

Fatty acid	Percentage
C18:1 w7c	43.9
C19:0 cyclo w8c	29.9
C16:0	3.8
C10:0 3OH	2.3
C12:0 3OH	1.8
C16:1 2OH	1.1
C18:1 w7c 11-methyl	1
C18:1 2OH	0.9
C18:0	0.4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Host Body-Site	#Plant	#Rhizosphere
#Host	#Plants	#Shrub (Scrub)
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Host species	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
66630	rhizosphere soil of a mangrove plant Kandelia candel	Kandelia candel	2016-12	Mai Po Nature Reserve, Hong Kong	China	CHN	Asia	22.49	114.05 22.49/114.05	MA	2 days	25

Taxonmaps

69479

Global distribution of 16S sequence KY038376 (>99% sequence identity) for Albibacillus kandeliae subclade from Microbeatlas

Aquatic Samples	128
Soil Samples	8
Animal Samples	18
Plant Samples
Total Samples	154

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM311658v1 assembly for Albibacillus kandeliae J95	contig	GCA_003116585	2174228.3	2840878972	2174228	73.34

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66630	Albibacillus kandeliae strain J95 16S ribosomal RNA gene, partial sequence	KY038376	1432		2174228

GC content

@ref	GC-content (mol%)	Method
66630	65.70	genome sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Albibacillus kandeliae J95
NCBI: GCA_003116585.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.33	yes
125438	anaerobic	anaerobicⓘ	no	99.13	no
125438	aerobic	aerobicⓘ	yes	85.75	no
125438	spore-forming	spore-formingⓘ	no	87.80	no
125438	thermophilic	thermophileⓘ	no	98.50	no
125438	flagellated	motile2+ⓘ	yes	56.66	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria.	Hordt A, Lopez MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, Gronow S, Kyrpides NC, Woyke T, Goker M.	Front Microbiol	10.3389/fmicb.2020.00468	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66630	Lv Zhang, Kai-Ling Wang, Qi Yin, Jin-You Liang and Ying Xu: Ruegeria kandeliae sp. nov., isolated from the rhizosphere soil of a mangrove plant Kandelia candel. IJSEM 68: 2653 - 2658 2018 ( DOI 10.1099/ijsem.0.002894 , PubMed 29949499 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

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Albibacillus kandeliae (MCCC 1K03284, DSM 104293, J95)

Name and taxonomic classification

Culture Collection Numbers

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003116585

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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