Piscinibacter caeni (CCTCC AB 2017223, JCM 32138, MQ-18)

Name: Piscinibacter caeni (CCTCC AB 2017223, JCM 32138, MQ-18)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159877

Type strain

Strain Designation MQ-18

Culture col. no. CCTCC AB 2017223 JCM 32138 MQ-18

NCBI tax ID(s) 1861917

Special Collections JCM Literature strains

Links

Piscinibacter caeni MQ-18 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from activated sludge of a pharmaceutical factory.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 132161

JCM 32138

@ref 20215

Last LPSN update 2025-12-16 10:08:22

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Sphaerotilaceae

Genus Piscinibacter

Species Piscinibacter caeni

Full scientific name Piscinibacter caeni Chen et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
66628	negative	1.9-2.7 µm	0.5-0.75 µm	rod-shaped		polar

Colony morphology

@ref	Colony color	Medium used
66628	yellow	R2A medium

Culture and growth conditions

Culture medium

@ref	Name	Growth
66628	Reasoner's 2A agar (R2A)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66628	positive	optimum	30	mesophilic
66628	positive	growth	20-40
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
66628	positive	optimum	7
66628	positive	growth	6.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
66628	aerobe
125439	obligate aerobe	99.7

Spore formation

@ref	Spore formation	Confidence
66628
125439		97.3

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
66628		NaCl	positive	growth	0-0.8 %(w/v)
66628	non-halophilic	NaCl	positive	optimum	0 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66628	16651 ChEBI	(S)-lactate	+	carbon source
66628	16763 ChEBI	2-oxobutanoate	+	carbon source
66628	16810 ChEBI	2-oxoglutarate	+	carbon source
66628	37054 ChEBI	3-hydroxybutyrate	-	carbon source
66628	73918 ChEBI	3-O-methyl-D-glucose	-	carbon source
66628	18101 ChEBI	4-hydroxyphenylacetic acid	-	carbon source
66628	16411 ChEBI	acetic acid	+	carbon source
66628	13705 ChEBI	acetoacetate	-	carbon source
66628	17128 ChEBI	adipate	-	assimilation
66628	17925 ChEBI	alpha-D-glucose	+	carbon source
66628		alpha-hydroxybutyrate	+	carbon source
66628	161680 ChEBI	aztreonam	+	carbon source
66628	73706 ChEBI	bromosuccinate	+	carbon source
66628	17057 ChEBI	cellobiose	+	carbon source
66628	62968 ChEBI	cellulose	-	hydrolysis
66628	53258 ChEBI	citric acid	-	carbon source
66628	18333 ChEBI	D-arabitol	+	carbon source
66628	29990 ChEBI	D-aspartate	-	carbon source
66628	15824 ChEBI	D-fructose	+	carbon source
66628	78697 ChEBI	D-fructose 6-phosphate	-	carbon source
66628	28847 ChEBI	D-fucose	-	carbon source
66628	12936 ChEBI	D-galactose	-	carbon source
66628	18024 ChEBI	D-galacturonic acid	-	carbon source
66628	30612 ChEBI	D-glucarate	+	carbon source
66628	17634 ChEBI	D-glucose	+	assimilation
66628	14314 ChEBI	D-glucose 6-phosphate	-	carbon source
66628	15748 ChEBI	D-glucuronate	-	carbon source
66628	15748 ChEBI	D-glucuronate	+	carbon source
66628	15588 ChEBI	D-malate	+	carbon source
66628	16899 ChEBI	D-mannitol	+	assimilation
66628	16899 ChEBI	D-mannitol	+	carbon source
66628	16024 ChEBI	D-mannose	+	assimilation
66628	16024 ChEBI	D-mannose	+	carbon source
66628	16523 ChEBI	D-serine	-	carbon source
66628	17924 ChEBI	D-sorbitol	+	carbon source
66628	16551 ChEBI	D-trehalose	+	carbon source
66628	27689 ChEBI	decanoate	-	assimilation
66628	23652 ChEBI	dextrin	+	carbon source
66628	4853 ChEBI	esculin	+	hydrolysis
66628	15740 ChEBI	formate	-	carbon source
66628	71321 ChEBI	fusidate	-	carbon source
66628	16537 ChEBI	galactarate	-	carbon source
66628	16865 ChEBI	gamma-aminobutyric acid	+	carbon source
66628	5291 ChEBI	gelatin	-	carbon source
66628	5291 ChEBI	gelatin	+	hydrolysis
66628	28066 ChEBI	gentiobiose	-	carbon source
66628	24265 ChEBI	gluconate	-	assimilation
66628	17234 ChEBI	glucose	-	fermentation
66628	32323 ChEBI	glucuronamide	-	carbon source
66628	17754 ChEBI	glycerol	+	carbon source
66628	70744 ChEBI	glycine-proline	-	carbon source
66628	32735 ChEBI	guanidinium chloride	-	carbon source
66628	17596 ChEBI	inosine	-	carbon source
66628	16977 ChEBI	L-alanine	+	carbon source
66628	30849 ChEBI	L-arabinose	+/-	assimilation
66628	16467 ChEBI	L-arginine	-	carbon source
66628	29991 ChEBI	L-aspartate	-	carbon source
66628	18287 ChEBI	L-fucose	+	carbon source
66628	17464 ChEBI	L-galactonic acid gamma-lactone	-	carbon source
66628	29985 ChEBI	L-glutamate	+	carbon source
66628	15971 ChEBI	L-histidine	-	carbon source
66628	15589 ChEBI	L-malate	+	carbon source
66628	18183 ChEBI	L-pyroglutamic acid	-	carbon source
66628	62345 ChEBI	L-rhamnose	+	carbon source
66628	17115 ChEBI	L-serine	-	carbon source
66628	17716 ChEBI	lactose	-	carbon source
66628	6472 ChEBI	lincomycin	+	carbon source
66628	48607 ChEBI	lithium chloride	-	carbon source
66628	25115 ChEBI	malate	-	assimilation
66628	17306 ChEBI	maltose	+	assimilation
66628	17306 ChEBI	maltose	+	carbon source
66628	28053 ChEBI	melibiose	-	carbon source
66628	74611 ChEBI	methyl (R)-lactate	+	carbon source
66628	320055 ChEBI	methyl beta-D-glucopyranoside	+	carbon source
66628	51850 ChEBI	methyl pyruvate	-	carbon source
66628	50694 ChEBI	minocycline	+	carbon source
66628	17268 ChEBI	myo-inositol	+	carbon source
66628	63153 ChEBI	N-acetyl-D-mannosamine	-	carbon source
66628	28800 ChEBI	N-acetylgalactosamine	-	carbon source
66628	59640 ChEBI	N-acetylglucosamine	-	assimilation
66628	59640 ChEBI	N-acetylglucosamine	-	carbon source
66628	35418 ChEBI	n-acetylneuraminate	-	carbon source
66628	100147 ChEBI	nalidixic acid	+	carbon source
66628	75273 ChEBI	niaproof	-	carbon source
66628	17632 ChEBI	nitrate	+	reduction
66628	17309 ChEBI	pectin	+	carbon source
66628	18401 ChEBI	phenylacetate	-	assimilation
66628	75248 ChEBI	potassium tellurite	+	carbon source
66628	17272 ChEBI	propionate	-	carbon source
66628	26490 ChEBI	quinate	+	carbon source
66628	16634 ChEBI	raffinose	-	carbon source
66628	29673 ChEBI	rifamycin sv	+	carbon source
66628	17814 ChEBI	salicin	+	carbon source
66628	75229 ChEBI	sodium bromate	-	carbon source
66628	64103 ChEBI	sodium butyrate	-	carbon source
66628	53258 ChEBI	sodium citrate	-	assimilation
66628	17164 ChEBI	stachyose	-	carbon source
66628	28017 ChEBI	starch	+	hydrolysis
66628	17992 ChEBI	sucrose	+	carbon source
66628	75198 ChEBI	tetrazolium blue	-	carbon source
66628	75193 ChEBI	tetrazolium violet	+	carbon source
66628	45735 ChEBI	troleandomycin	-	carbon source
66628	32528 ChEBI	turanose	+	carbon source
66628	53424 ChEBI	tween 20	+	hydrolysis
66628	53423 ChEBI	tween 40	+	carbon source
66628	53426 ChEBI	tween 80	+	hydrolysis
66628	28001 ChEBI	vancomycin	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
66628	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
66628	acid phosphatase	+	3.1.3.2
66628	alkaline phosphatase	-	3.1.3.1
66628	alpha-chymotrypsin	-	3.4.21.1
66628	alpha-galactosidase	-	3.2.1.22
66628	alpha-glucosidase	+	3.2.1.20
66628	alpha-mannosidase	-	3.2.1.24
66628	arginine dihydrolase	-	3.5.3.6
66628	beta-D-fucosidase	-	3.2.1.38
66628	beta-galactosidase	+	3.2.1.23
66628	beta-glucosidase	+	3.2.1.21
66628	beta-glucuronidase	-	3.2.1.31
66628	catalase	+	1.11.1.6
66628	cystine arylamidase	-	3.4.11.3
66628	cytochrome oxidase	+	1.9.3.1
66628	esterase (C 4)	+
66628	esterase Lipase (C 8)	-
66628	leucine arylamidase	-	3.4.11.1
66628	lipase (C 14)	-
66628	N-acetyl-beta-glucosaminidase	-	3.2.1.52
66628	naphthol-AS-BI-phosphohydrolase	+
66628	trypsin	-	3.4.21.4
66628	urease	-	3.5.1.5
66628	valine arylamidase	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Activated sludge
#Engineered	#Industrial	#Plant (Factory)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
66628	activated sludge of a pharmaceutical factory	Zhejiang	China	CHN	Asia	R2A	0.5 g/l proteose peptone, 0.5 g/l casamino acids, 0.5 g/l soluble starch, 0.5 g/l yeast extract, 0.5 g/l dextrose, 0.3 g/l dipotassium phosphate, 0.05 g/l magnesium sulfate heptahydrate, 0.3 g/l sodium pyruvate, 15 g/l agar.	4 days	30	1 ml activated sludge was first cultivated in 50 ml distilled water for 3 days. Next, the solutionwas diluted and spread on R2A agar.
67770	Activated sludge from a pharmaceutical factory in Zhejiang		China	CHN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
67770	ASM326568v1 assembly for Piscinibacter caeni MQ-18	scaffold	GCA_003265685	1861917.3	2883124827	1861917

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66628	Piscinibacter caeni strain MQ-18 16S ribosomal RNA gene, partial sequence	KX390668	1445		1861917

GC content

@ref	GC-content (mol%)	Method
66628	70.10	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Piscinibacter caeni MQ-18
NCBI: GCA_003265685

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.30	no
125439	motility	BacteriaNetⓘ	yes	71.80	no
125439	gram_stain	BacteriaNetⓘ	negative	86.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.70	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Interaction of tetrahydrofuran and methyl tert-butyl ether in waste gas treatment by a biotrickling filter bioaugmented with Piscinibacter caeni MQ-18 and Pseudomonas oleovorans DT4.	Liu HY, Yang GF, Cheng ZW, Chu QY, Xu YF, Zhang WX, Ye JX, Chen JM, Wang LN, Yang ZY, Tang ZQ, Chen DZ	Chemosphere	10.1016/j.chemosphere.2021.131552	2021
Phylogeny	Piscinibacter caeni sp. nov., isolated from activated sludge.	Chen DZ, Yu NN, Chu QY, Chen J, Ye JX, Cheng ZW, Zhang SH, Chen JM	Int J Syst Evol Microbiol	10.1099/ijsem.0.002891	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66628	Dong-Zhi Chen, Ning-Ning Yu, Qi-Ying Chu, Jing Chen, Jie-Xu Ye, Zhuo-Wei Cheng, Shi-Han Zhang and Jian-Meng Chen: Piscinibacter caeni sp. nov., isolated from activated sludge. IJSEM 68: 2627 - 2632 2018 ( DOI 10.1099/ijsem.0.002891 , PubMed 29957173 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Piscinibacter caeni (CCTCC AB 2017223, JCM 32138, MQ-18)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003265685

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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