Name: Streptomyces lichenis LCR6-01
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159852

Type strain:

Species: Streptomyces lichenis

Strain Designation: LCR6-01

Culture col. no.: KCTC 39908, TISTR 2500

NCBI tax ID(s): 2306967 (species)

Section

Streptomyces lichenis LCR6-01 is an aerobe, spore-forming, mesophilic bacterium that forms filamentous colonies and was isolated from a lichen sample, Dirinaria sp..

colony-forming
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces lichenis**
	Full Scientific Name (LPSN)	Streptomyces lichenis Saeng-in et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66760]	Colony color	pale greenish yellow to greyish yellowish green
[Ref.: #66760]	Colony shape	filamentous
[Ref.: #66760]	Cultivation medium used	agar media

Information on culture and growth conditions Culture and growth conditions

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Culture medium

agar media

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Culture medium growth

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Culture medium

ISP 2

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Culture medium growth

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Culture medium

ISP 3

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Culture medium growth

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Culture medium

ISP 4

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Culture medium growth

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Culture medium

ISP 5

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Culture medium growth

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Culture medium

ISP 6

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Culture medium growth

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Culture medium

ISP 7

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #66760]			optimum	30 °C
[Ref.: #66760]			growth	20-40 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #66760]			optimum	7-9
[Ref.: #66760]			growth	5-9

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

[Ref.: #66760]	Spore description	Cylindrical spores, with smooth surface, are arranged in rectiflexibiles chains.
[Ref.: #66760]	Type of spore	spore
[Ref.: #66760]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66760]		NaCl		growth	0-5	%(w/v)

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Observation

The substrate mycelia are brilliant orange to brilliant yellow in colour.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66760]	cellobiose ChEBI	+	assimilation
[Ref.: #66760]	cellulose ChEBI	-	assimilation
[Ref.: #66760]	D-mannitol ChEBI	+	assimilation
[Ref.: #66760]	D-mannose ChEBI	+	assimilation
[Ref.: #66760]	D-xylose ChEBI	+	assimilation
[Ref.: #66760]	fructose ChEBI	+	assimilation
[Ref.: #66760]	galactose ChEBI	+	assimilation
[Ref.: #66760]	gelatin ChEBI	+	degradation
[Ref.: #66760]	glucose ChEBI	+	assimilation
[Ref.: #66760]	glycerol ChEBI	+	assimilation
[Ref.: #66760]	L-arabinose ChEBI	-	assimilation
[Ref.: #66760]	L-rhamnose ChEBI	-	assimilation
[Ref.: #66760]	melibiose ChEBI	-	assimilation
[Ref.: #66760]	myo-inositol ChEBI	-	assimilation
[Ref.: #66760]	nitrate ChEBI	-	reduction
[Ref.: #66760]	raffinose ChEBI	-	assimilation
[Ref.: #66760]	skimmed milk	+	degradation
[Ref.: #66760]	starch ChEBI	-	hydrolysis
[Ref.: #66760]	sucrose ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #66760]	acid phosphatase	-	3.1.3.2
[Ref.: #66760]	alkaline phosphatase	+	3.1.3.1
[Ref.: #66760]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #66760]	alpha-fucosidase	-	3.2.1.51
[Ref.: #66760]	alpha-galactosidase	-	3.2.1.22
[Ref.: #66760]	alpha-glucosidase	-	3.2.1.20
[Ref.: #66760]	alpha-mannosidase	-	3.2.1.24
[Ref.: #66760]	beta-galactosidase	-	3.2.1.23
[Ref.: #66760]	beta-glucosidase	+	3.2.1.21
[Ref.: #66760]	beta-glucuronidase	-	3.2.1.31
[Ref.: #66760]	cystine arylamidase	+	3.4.11.3
[Ref.: #66760]	esterase (C 4)	+
[Ref.: #66760]	esterase Lipase (C 8)	+
[Ref.: #66760]	leucine arylamidase	+	3.4.11.1
[Ref.: #66760]	lipase (C 14)	+
[Ref.: #66760]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #66760]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #66760]	trypsin	+	3.4.21.4
[Ref.: #66760]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C15:0 anteiso	23.3
C15:0 iso	16.4
C16:0 iso	15.3
C14:0 iso	13.6
C16:0	8.5
C16:1 w6c / C16:1 w7c	4.9
C17:0 anteiso	2.9
C16:1 iso H	2.3
C17:0 iso	2.1
C16:0 10-methyl / iso-C17:1 w9c	1.6
C14:0	1.5
C17:1 anteiso w9c	1.1
C17:1 w8c	0.9
C13:0 iso	0.9
C17:0	0.6
C13:0 anteiso	0.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66760]	Sample type/isolated from	a lichen sample, Dirinaria sp.
[Ref.: #66760]	Host species	Dirinaria sp.
[Ref.: #66760]	Geographic location (country and/or sea, region)	Chiang Rai Province
[Ref.: #66760]	Country	Thailand
[Ref.: #66760]	Country ISO 3 Code	THA
[Ref.: #66760]	Continent	Asia
[Ref.: #66760]	Geographic location	12.7492°/101.5710°
[Ref.: #66760]	Enrichment culture	Arginine-vitamin agar plates
* marker position based on {}

Isolation sources categories

#Host	#Other	#Lichen
#Host	#Fungi	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66760]	Streptomyces lichenis LCR6-01 gene for 16S ribosomal RNA, partial sequence	LC360144	1441	ENA	2306967 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces lichenis LCR6-01	GCA_023218175	contig	GenBank	2306967 tax ID	*

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GC-content

74.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces lichenis LCR6-01 NCBI: GCA_023218175.1
[Ref.: #69480]	flagellated	no	97.817	no
[Ref.: #69480]	gram-positive	yes	90.298	no
[Ref.: #69480]	anaerobic	no	98.892	no
[Ref.: #69480]	aerobic	yes	89.926	yes
[Ref.: #69480]	halophile	no	95.183	no
[Ref.: #69480]	spore-forming	yes	95.459	yes
[Ref.: #69480]	motile	no	94.045	no
[Ref.: #69480]	glucose-ferment	no	90.784	no
[Ref.: #69480]	thermophile	no	98.463	yes
[Ref.: #69480]	glucose-util	yes	90.246	yes

Availability in culture collections External links

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Culture collection no.

KCTC 39908, TISTR 2500

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces lichenis sp. nov., isolated from lichen.	Saeng-In P, Phongsopitanun W, Savarajara A, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003052	2018	*
Phylogeny	Streptomyces solincola sp. nov., isolated from soil in Malaysia.	Lee ZY, Ng ZY, Mohd Nor MN, Teo WFA, Tan GYA	Int J Syst Evol Microbiol	10.1099/ijsem.0.005594	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66760

Patcharin Saeng-in, Wongsakorn Phongsopitanun, Ancharida Savarajara, Somboon Tanasupawat: Streptomyces lichenis sp. nov., isolated from lichen. IJSEM 68: 3641 - 3646 2018 ( DOI 10.1099/ijsem.0.003052 , PubMed 30303477 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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