Maribacter litoralis (JCM 32373, KCTC 62273, DSM 106042)

Name: Maribacter litoralis (JCM 32373, KCTC 62273, DSM 106042)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159839

Type strain

Strain Designation SDRB-Phe2

Culture col. no. JCM 32373 KCTC 62273 DSM 106042 SDRB-Phe2

NCBI tax ID(s) 2059726

Special Collections DSMZ JCM KCTC Literature strains

History B. S. Kim; Korea Univ., South Korea; SDRB-Phe2.

Links

Maribacter litoralis SDRB-Phe2 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from a beach sediment during an investigation of polycyclic aromatic hydrocarbon-degrading bacteria on beach sediment contaminated by crude oil spill accident.

Gram-negative motile rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 25172

KCTC 62273,JCM 32373

@ref 20215

Last LPSN update 2026-02-09 11:38:44

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Maribacter

Species Maribacter litoralis

Full scientific name Maribacter litoralis Lee et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
66725	negative	2.3-2.9 µm	0.5-0.6 µm	rod-shaped
125439	negative					98.3

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
66725	2-3 mm	yellow	circular	5 days	Marine agar (MA)

Pigmentation

@ref	Production	Name
66725		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Composition
66725	ISP 2
66725	Marine agar (MA)
66725	Nutrient agar (NA)	supplemented with artificial seawater
66725	tryptic soy agar (TSA)
66725	tryptic soy agar (TSA)	supplemented with artificial seawater

Culture temp

@ref	Growth	Type	Temperature (°C)
66725	positive	optimum	20-30
66725	positive	growth	4-37
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
66725	positive	optimum	6.0-9.0
66725	positive	growth	5-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

66725

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125439		97.6

Halophily

@ref	Salt	Growth	Tested relation	Concentration
66725	NaCl	positive	growth	0-9.0 %(w/v)
66725	NaCl	positive	optimum	0-3 %(w/v)

Observation

@ref	Observation
66725	cells produce capsular EPS
67770	quinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66725	62064 ChEBI	2,3-butanediol	-	carbon source
66725	64552 ChEBI	2-hydroxybutyrate	-	carbon source
66725	16763 ChEBI	2-oxobutanoate	-	carbon source
66725	16810 ChEBI	2-oxoglutarate	-	carbon source
66725	28644 ChEBI	2-oxopentanoate	-	carbon source
66725	37054 ChEBI	3-hydroxybutyrate	-	carbon source
66725	16724 ChEBI	4-hydroxybutyrate	-	carbon source
66725	18101 ChEBI	4-hydroxyphenylacetic acid	+	carbon source
66725	16411 ChEBI	acetic acid	-	carbon source
66725	17128 ChEBI	adipate	-	assimilation
66725	2509 ChEBI	agar	-	hydrolysis
66725	40585 ChEBI	alpha-cyclodextrin	-	carbon source
66725	17925 ChEBI	alpha-D-glucose	+	carbon source
66725	73706 ChEBI	bromosuccinate	-	carbon source
66725	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
66725		casein	-	hydrolysis
66725	17057 ChEBI	cellobiose	-	carbon source
66725	16383 ChEBI	cis-aconitate	-	carbon source
66725	53258 ChEBI	citric acid	-	carbon source
66725	15570 ChEBI	D-alanine	-	carbon source
66725	18333 ChEBI	D-arabitol	-	carbon source
66725	15824 ChEBI	D-fructose	+	carbon source
66725	15895 ChEBI	D-galactonic acid lactone	-	carbon source
66725	12936 ChEBI	D-galactose	-	carbon source
66725	18024 ChEBI	D-galacturonic acid	-	carbon source
66725	30612 ChEBI	D-glucarate	-	carbon source
66725	8391 ChEBI	D-gluconate	-	carbon source
66725	17784 ChEBI	D-glucosaminic acid	-	carbon source
66725	17634 ChEBI	D-glucose	-	assimilation
66725	14314 ChEBI	D-glucose 6-phosphate	-	carbon source
66725	15748 ChEBI	D-glucuronate	-	carbon source
66725	16899 ChEBI	D-mannitol	-	assimilation
66725	16899 ChEBI	D-mannitol	-	carbon source
66725	16024 ChEBI	D-mannose	-	assimilation
66725	16024 ChEBI	D-mannose	+	carbon source
66725	27605 ChEBI	D-psicose	-	carbon source
66725	16523 ChEBI	D-serine	-	carbon source
66725	17924 ChEBI	D-sorbitol	-	carbon source
66725	27689 ChEBI	decanoate	-	assimilation
66725	23652 ChEBI	dextrin	+	carbon source
66725	17126 ChEBI	DL-carnitine	-	carbon source
66725	16991 ChEBI	dna	-	hydrolysis
66725	17113 ChEBI	erythritol	-	carbon source
66725	4853 ChEBI	esculin	+	degradation
66725	16000 ChEBI	ethanolamine	-	carbon source
66725	15740 ChEBI	formate	-	carbon source
66725	16865 ChEBI	gamma-aminobutyric acid	-	carbon source
66725	5291 ChEBI	gelatin	-	hydrolysis
66725	28066 ChEBI	gentiobiose	-	carbon source
66725	17234 ChEBI	glucose	-	fermentation
66725	29042 ChEBI	glucose 1-phosphate	-	carbon source
66725	32323 ChEBI	glucuronamide	-	carbon source
66725	17754 ChEBI	glycerol	-	carbon source
66725	14336 ChEBI	glycerol 1-phosphate	-	carbon source
66725	28087 ChEBI	glycogen	-	carbon source
66725	73804 ChEBI	glycyl L-aspartic acid	-	carbon source
66725	73784 ChEBI	glycyl-L-glutamate	-	carbon source
66725	24741 ChEBI	hydroxyproline	-	carbon source
66725	17368 ChEBI	hypoxanthine	-	hydrolysis
66725	17596 ChEBI	inosine	-	carbon source
66725	17240 ChEBI	itaconate	-	carbon source
66725	21217 ChEBI	L-alaninamide	-	carbon source
66725	16977 ChEBI	L-alanine	-	carbon source
66725	73786 ChEBI	L-alanylglycine	-	carbon source
66725	30849 ChEBI	L-arabinose	-	assimilation
66725	30849 ChEBI	L-arabinose	-	carbon source
66725	17196 ChEBI	L-asparagine	-	carbon source
66725	29991 ChEBI	L-aspartate	-	carbon source
66725	18287 ChEBI	L-fucose	-	carbon source
66725	29985 ChEBI	L-glutamate	-	carbon source
66725	15971 ChEBI	L-histidine	-	carbon source
66725	15603 ChEBI	L-leucine	-	carbon source
66725	15729 ChEBI	L-ornithine	-	carbon source
66725	17295 ChEBI	L-phenylalanine	-	carbon source
66725	17203 ChEBI	L-proline	-	carbon source
66725	18183 ChEBI	L-pyroglutamic acid	-	carbon source
66725	62345 ChEBI	L-rhamnose	-	carbon source
66725	17115 ChEBI	L-serine	-	carbon source
66725	16857 ChEBI	L-threonine	-	carbon source
66725	24996 ChEBI	lactate	-	carbon source
66725	17716 ChEBI	lactose	-	carbon source
66725	6359 ChEBI	lactulose	-	carbon source
66725	25115 ChEBI	malate	-	assimilation
66725	15792 ChEBI	malonate	-	carbon source
66725	17306 ChEBI	maltose	-	assimilation
66725	17306 ChEBI	maltose	-	carbon source
66725	28053 ChEBI	melibiose	-	carbon source
66725	37657 ChEBI	methyl D-glucoside	-	carbon source
66725	51850 ChEBI	methyl pyruvate	-	carbon source
66725	75146 ChEBI	monomethyl succinate	+	carbon source
66725	17268 ChEBI	myo-inositol	-	carbon source
66725	28800 ChEBI	N-acetylgalactosamine	-	carbon source
66725	59640 ChEBI	N-acetylglucosamine	-	assimilation
66725	59640 ChEBI	N-acetylglucosamine	-	carbon source
66725	17632 ChEBI	nitrate	-	reduction
66725	18401 ChEBI	phenylacetate	-	assimilation
66725	50048 ChEBI	phenylethylamine	-	carbon source
66725	32032 ChEBI	potassium gluconate	-	assimilation
66725	17272 ChEBI	propionate	-	carbon source
66725	17148 ChEBI	putrescine	-	carbon source
66725	26490 ChEBI	quinate	-	carbon source
66725	16634 ChEBI	raffinose	-	carbon source
66725	15963 ChEBI	ribitol	-	carbon source
66725	41865 ChEBI	sebacic acid	+	carbon source
66725	53258 ChEBI	sodium citrate	-	assimilation
66725	143136 ChEBI	succinamate	-	carbon source
66725	30031 ChEBI	succinate	-	carbon source
66725	17992 ChEBI	sucrose	-	carbon source
66725	17748 ChEBI	thymidine	-	carbon source
66725	27082 ChEBI	trehalose	+	carbon source
66725	32528 ChEBI	turanose	-	carbon source
66725	53423 ChEBI	tween 40	+	carbon source
66725	53426 ChEBI	tween 80	-	carbon source
66725	18186 ChEBI	tyrosine	+	hydrolysis
66725	16704 ChEBI	uridine	-	carbon source
66725	27248 ChEBI	urocanic acid	-	carbon source
66725	15318 ChEBI	xanthine	-	hydrolysis
66725	17151 ChEBI	xylitol	-	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
66725	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
66725	acid phosphatase	+	3.1.3.2
66725	alkaline phosphatase	+	3.1.3.1
66725	alpha-chymotrypsin	-	3.4.21.1
66725	alpha-fucosidase	-	3.2.1.51
66725	alpha-galactosidase	+	3.2.1.22
66725	alpha-glucosidase	+	3.2.1.20
66725	alpha-mannosidase	+	3.2.1.24
66725	arginine dihydrolase	-	3.5.3.6
66725	beta-galactosidase	-	3.2.1.23
66725	beta-glucosidase	+	3.2.1.21
66725	beta-glucuronidase	-	3.2.1.31
66725	catalase	+	1.11.1.6
66725	cystine arylamidase	+	3.4.11.3
66725	cytochrome oxidase	+	1.9.3.1
66725	esterase (C 4)	+
66725	esterase Lipase (C 8)	+
66725	leucine arylamidase	+	3.4.11.1
66725	lipase (C 14)	-
66725	N-acetyl-beta-glucosaminidase	+	3.2.1.52
66725	naphthol-AS-BI-phosphohydrolase	+
66725	trypsin	-	3.4.21.4
66725	urease	-	3.5.1.5
66725	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Coast
#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Terrestrial	#Sediment

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
66725	a beach sediment during an investigation of polycyclic aromatic hydrocarbon-degrading bacteria on beach sediment contaminated by crude oil spill accident	2016-07-24	Sinduri beach in Taean	Republic of Korea	KOR	Asia	35.9833	126.6 35.9833/126.6	mineral salts basal (MSB) medium	20.0 g NaCl, 7.0 g Na2HPO4 12HO, 1 g KH2PO4 , 10 mg CaCl2 2H2O, 1 mg FeCl3 , 20 mg MgSO4 7H2O, 1 g (NH4)2SO4 and 1000 ml distilled water; pH 7.0) supplemented with 20 mg of naphthalene, phenanthrene or pyrene	7 days	28	A beach sediment sample was collected from Sinduri beach in Taean, Republic of Korea in 24 July 2016. The sediment sample was inoculated into separate Erlenmeyer flasks containing 100 ml modified mineral salts basal medium (20.0 g NaCl, 7.0 g Na2HPO4 12HO, 1 g KH2PO4 , 10 mg CaCl2 2H2O, 1 mg FeCl3 , 20 mg MgSO4 7H2O, 1 g (NH4)2SO4 and 1000 ml distilled water; pH 7.0) supplemented with 20 mg of naphthalene, phenanthrene or pyrene as the sole carbon source. After incubation for 7 days with shaking (200 r.p.m) at 28°C, 10 ml culture broth was transferred into 100 ml fresh MSB medium for an additional 7 days of enrichment. Subsequently, enrichment cultures were diluted and spread onto marine agar, and the plates were incubated for 3 days at 28°C.
67770	Sinduri beach sediment in Taean			Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence MG456900 (>99% sequence identity) for Maribacter litoralis from Microbeatlas

Aquatic Samples	230
Soil Samples	1
Animal Samples	6
Plant Samples	6
Total Samples	243

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM307504v1 assembly for Maribacter litoralis SDRB-Phe2	scaffold	GCA_003075045	2059726.3	2834232880	2059726	69.01

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66725	Maribacter litoralis strain SDRB-Phe2 16S ribosomal RNA gene, partial sequence	MG456900	1442		2059726

GC content

@ref	GC-content (mol%)	Method
66725	36.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Maribacter litoralis SDRB-Phe2
NCBI: GCA_003075045

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.60	no
125439	motility	BacteriaNetⓘ	no	64.80	no
125439	gram_stain	BacteriaNetⓘ	negative	98.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	89.70	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Maribacter litoralis sp. nov. a marine bacterium isolated from seashore.	Lee DW, Lee H, Kwon BO, Khim JS, Yim UH, Park H, Park B, Choi IG, Kim BS, Kim JJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003011	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66725	Dong Wan Lee, Hanbyul Lee, Bong-Oh Kwon, Jong Seong Khim, Un Hyuk Yim, Hongjae Park, Byeonghyeok Park, In-Geol Choi, Beom Seok Kim, Jae-Jin Kim: Maribacter litoralis sp. nov. a marine bacterium isolated from seashore. IJSEM 68: 3471 - 3478 2018 ( DOI 10.1099/ijsem.0.003011 , PubMed 30222095 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Maribacter litoralis (JCM 32373, KCTC 62273, DSM 106042)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003075045

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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