Name: Enterobacter sichuanensis GDMCC1.1217
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159819

Type strain:

Species: Enterobacter sichuanensis

Strain Designation: GDMCC1.1217

Culture col. no.: CCTCC AB 2017104, KCTC 52994, WCHECl WCHECL1597

NCBI tax ID(s): 2071710 (species)

Section

Enterobacter sichuanensis GDMCC1.1217 is a facultative anaerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from urine of a patient with chronic renal insufficiency.

colony-forming
Gram-negative
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Enterobacter*
	Species	**Enterobacter sichuanensis**
	Full Scientific Name (LPSN)	Enterobacter sichuanensis Wu et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66786]	Gram stain	negative

[Ref.: #66786]	Cell length	2.8 µm

[Ref.: #66786]	Cell width	1.6 µm

[Ref.: #66786]	Cell shape	rod-shaped

[Ref.: #66786]	Motility	no

[Ref.: #66786]	Colony color	white-translucent
[Ref.: #66786]	Colony shape	circular
[Ref.: #66786]	Incubation period	1 day
[Ref.: #66786]	Cultivation medium used	Nutrient agar (NA)

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

TSB

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Culture medium growth

	Kind of temperature		Temperature
[Ref.: #66786]		optimum	35-37 °C
[Ref.: #66786]		growth	4-37 °C
[Ref.: #66786]	no	growth	45-50 °C

[Ref.: #66786]	Temperature range	mesophilic
[Ref.: #66786]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #66786]			optimum	6-7
[Ref.: #66786]			growth	5-10

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

facultative anaerobe

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66786]		NaCl		growth	0-9	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66786]	amygdalin ChEBI	+	builds acid from
[Ref.: #66786]	arbutin ChEBI	+	builds acid from
[Ref.: #66786]	beta-D-xylose ChEBI	+	builds acid from
[Ref.: #66786]	cellobiose ChEBI	+	builds acid from
[Ref.: #66786]	D-arabinose ChEBI	-	builds acid from
[Ref.: #66786]	D-fructose ChEBI	+	builds acid from
[Ref.: #66786]	D-galactose ChEBI	+	builds acid from
[Ref.: #66786]	D-glucose ChEBI	+	builds acid from
[Ref.: #66786]	D-mannitol ChEBI	-	builds acid from
[Ref.: #66786]	D-mannose ChEBI	+	builds acid from
[Ref.: #66786]	D-ribose ChEBI	+	builds acid from
[Ref.: #66786]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #66786]	erythritol ChEBI	-	builds acid from
[Ref.: #66786]	esculin ChEBI	-	builds acid from
[Ref.: #66786]	galactitol ChEBI	-	builds acid from
[Ref.: #66786]	gentiobiose ChEBI	+	builds acid from
[Ref.: #66786]	glycerol ChEBI	+	builds acid from
[Ref.: #66786]	inulin ChEBI	-	builds acid from
[Ref.: #66786]	isocitrate ChEBI	+	assimilation
[Ref.: #66786]	L-arabinose ChEBI	+	builds acid from
[Ref.: #66786]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #66786]	L-sorbose ChEBI	-	builds acid from
[Ref.: #66786]	L-xylose ChEBI	-	builds acid from
[Ref.: #66786]	lactose ChEBI	+	builds acid from
[Ref.: #66786]	lyxose ChEBI	+	builds acid from
[Ref.: #66786]	maltose ChEBI	+	builds acid from
[Ref.: #66786]	melezitose ChEBI	-	builds acid from
[Ref.: #66786]	melibiose ChEBI	+	builds acid from
[Ref.: #66786]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #66786]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #66786]	myo-inositol ChEBI	+	builds acid from
[Ref.: #66786]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #66786]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #66786]	raffinose ChEBI	+	builds acid from
[Ref.: #66786]	ribitol ChEBI	-	builds acid from
[Ref.: #66786]	salicin ChEBI	+	builds acid from
[Ref.: #66786]	starch ChEBI	-	builds acid from
[Ref.: #66786]	sucrose ChEBI	+	builds acid from
[Ref.: #66786]	trehalose ChEBI	+	builds acid from
[Ref.: #66786]	turanose ChEBI	-	builds acid from
[Ref.: #66786]	turanose ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #66786]	acetoin ChEBI	yes
[Ref.: #66786]	hydrogen sulfide ChEBI	no
[Ref.: #66786]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #66786]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #66786]	arginine dihydrolase	+	3.5.3.6
[Ref.: #66786]	beta-galactosidase	+	3.2.1.23
[Ref.: #66786]	catalase	+	1.11.1.6
[Ref.: #66786]	cytochrome oxidase	-	1.9.3.1
[Ref.: #66786]	gelatinase	-
[Ref.: #66786]	lysine decarboxylase	-	4.1.1.18
[Ref.: #66786]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #66786]	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #66786]

Fatty acid	Percentage
C16:0	27.1
C17:0 cyclo	19.4
C14:0	12.4
C14:0 3OH/iso-C16:1 I	12.3
C18:1 w7c	12.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66786]	Sample type/isolated from	urine of a patient with chronic renal insufficiency
[Ref.: #66786]	Sampling date	2016-04
[Ref.: #66786]	Geographic location (country and/or sea, region)	Hospital of Sichuan University in Chengdu
[Ref.: #66786]	Country	China
[Ref.: #66786]	Country ISO 3 Code	CHN
[Ref.: #66786]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body Product	#Fluids	#Urine
#Infection	#Patient	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MG832788 (>99% sequence identity) for Enterobacterales from Microbeatlas

Aquatic Samples	888
Soil Samples	575
Animal Samples	11838
Plant Samples	920
Total Samples	14221

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66786]	Enterobacter sichuanensis strain WCHECL1597 16S ribosomal RNA gene, partial sequence	MG832788	1528	ENA	2071710 tax ID

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GC-content

55.2 mol%

genome sequence analysis

Availability in culture collections External links

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Culture collection no.

CCTCC AB 2017104, KCTC 52994, WCHECl WCHECL1597

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Enterobacter sichuanensis sp. nov., recovered from human urine.	Wu W, Feng Y, Zong Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.003089	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66786

Wenjing Wu, Yu Feng and Zhiyong Zong: Enterobacter sichuanensis sp. nov., recovered from human urine. IJSEM 68: 3922 - 3927 2018 ( DOI 10.1099/ijsem.0.003089 , PubMed 30387707 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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