Name: Clostridium composti YH-tan31
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159814

Type strain:

Species: Clostridium composti

Strain Designation: YH-tan31

Culture col. no.: KCTC 15630, JCM 32793

Strain history: <- Young-Hyo Chang, KRIBB

NCBI tax ID(s): 2569155 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Clostridium composti YH-tan31 is an obligate anaerobe, spore-forming, mesophilic bacterium that forms circular colonies and was isolated from compost.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
mesophilic
obligate anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium composti**
	Full Scientific Name (LPSN)	Clostridium composti Shin et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66777]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #66777]	Cell length	1.0-2.7 µm

[Ref.: #66777]	Cell width	0.1-0.3 µm

[Ref.: #66777]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #66777]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #66777]	Flagellum arrangement	peritrichous
[Ref.: #67771]	Flagellum arrangement	peritrichous

[Ref.: #66777]	Colony size	1 mm
[Ref.: #66777]	Colony color	cream
[Ref.: #66777]	Colony shape	circular
[Ref.: #66777]	Incubation period	3 days
[Ref.: #66777]	Cultivation medium used	RCM agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66777]

Culture medium

RCM agar

[Ref.: #66777]

Culture medium growth

		Temperature
[Ref.: #66777]	optimum	37 °C
[Ref.: #66777]	growth	20-45 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #66777]			optimum	6.5
[Ref.: #66777]			growth	5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66777]	Oxygen tolerance	obligate anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe

[Ref.: #66777]	Type of spore	endospore
[Ref.: #66777]	Ability of spore formation	yes
[Ref.: #67771]	Type of spore	spore
[Ref.: #67771]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66777]		NaCl		growth	0-2	%(w/v)

[Ref.: #66777]	Observation	The major polar lipids are diphosphatidylglycerol, phosphatidylglycerol, and phosphatidylethanolamine.
[Ref.: #66777]	Observation	The major end products of glucose fermentation are butyrate, acetate and lactate.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66777]	cellobiose ChEBI	+	fermentation
[Ref.: #66777]	D-arabinose ChEBI	-	fermentation
[Ref.: #66777]	esculin ChEBI	+	hydrolysis
[Ref.: #66777]	gelatin ChEBI	+	hydrolysis
[Ref.: #66777]	glucose ChEBI	+	fermentation
[Ref.: #66777]	glycerol ChEBI	+	fermentation
[Ref.: #66777]	hydrogen sulfide ChEBI	+	hydrolysis
[Ref.: #66777]	lactose ChEBI	-	fermentation
[Ref.: #66777]	maltose ChEBI	-	fermentation
[Ref.: #66777]	mannitol ChEBI	-	fermentation
[Ref.: #66777]	mannose ChEBI	+	fermentation
[Ref.: #66777]	melezitose ChEBI	+	fermentation
[Ref.: #66777]	raffinose ChEBI	+	fermentation
[Ref.: #66777]	rhamnose ChEBI	+	fermentation
[Ref.: #66777]	salicin ChEBI	+	fermentation
[Ref.: #66777]	sorbitol ChEBI	+	fermentation
[Ref.: #66777]	sucrose ChEBI	-	fermentation
[Ref.: #66777]	trehalose ChEBI	+	fermentation
[Ref.: #66777]	xylose ChEBI	-	fermentation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #66777]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #66777]	6-phospho-beta-galactosidase	-	3.2.1.85
[Ref.: #66777]	alanine arylamidase	-	3.4.11.2
[Ref.: #66777]	alkaline phosphatase	-	3.1.3.1
[Ref.: #66777]	alpha-arabinosidase	-
[Ref.: #66777]	alpha-fucosidase	-	3.2.1.51
[Ref.: #66777]	alpha-galactosidase	+	3.2.1.22
[Ref.: #66777]	alpha-glucosidase	-	3.2.1.20
[Ref.: #66777]	arginine dihydrolase	-	3.5.3.6
[Ref.: #66777]	beta-galactosidase	-	3.2.1.23
[Ref.: #66777]	beta-glucosidase	-	3.2.1.21
[Ref.: #66777]	beta-glucuronidase	-	3.2.1.31
[Ref.: #66777]	catalase	-	1.11.1.6
[Ref.: #66777]	cytochrome oxidase	-	1.9.3.1
[Ref.: #66777]	glutamate decarboxylase	-	4.1.1.15
[Ref.: #66777]	glycin arylamidase	-
[Ref.: #66777]	histidine arylamidase	-
[Ref.: #66777]	leucine arylamidase	+	3.4.11.1
[Ref.: #66777]	leucyl glycin arylamidase	-	3.4.11.1
[Ref.: #66777]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #66777]	nitrate reductase	-	1.7.99.4
[Ref.: #66777]	phenylalanine arylamidase	-
[Ref.: #66777]	proline-arylamidase	-	3.4.11.5
[Ref.: #66777]	pyroglutamic acid arylamidase	-
[Ref.: #66777]	tyrosine arylamidase	-
[Ref.: #66777]	urease	-	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #66777]

Fatty acid	Percentage
C14:0	31.5
C16:0	23.2
C16:0 DMA	13.6
C19:0 cis 11,12 DMA	10.8
C18:1 cis 11 DMA	6.5
C18:1 cis 9	2.6
C16:0 ALDE	2.5
C17:0 cyc DMA	2.3
C14:0 DMA	1.9
C18:1 cis 9 DMA	1.8
C16:1 cis 9 DMA	1.3
C12:0	1.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66777]	Sample type/isolated from	compost
[Ref.: #66777]	Enrichment culture	clostridial medium
[Ref.: #66777]	Enrichment culture composition	(RCM; pH 6.8; Difco)
[Ref.: #66777]	Enrichment culture duration	48 h
[Ref.: #66777]	Enrichment culture temperature	37 ̊C
[Ref.: #66777]	Isolation/enrichment procedure	Compost was serially diluted with phosphate-buffered saline (pH 7.0), under anaerobic conditions (Forma Anaerobic System; Thermo Fisher Scientific) in a gas phase of N2/H2/CO2 (88 : 7 : 5 %, v/v/v).

[Ref.: #67770]	Sample type/isolated from	Compost
[Ref.: #67770]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From compost soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Biodegradation

#Composting

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66777]	Clostridium composti strain YHTAN-31 16S ribosomal RNA gene, partial sequence	MF496372	1439	GenBank ENA	2569155 tax ID

[Ref.: #66777]	GC-content	30.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	30.9 mol%

Availability in culture collections External links

[Ref.: #66777]

Culture collection no.

KCTC 15630, JCM 32793

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Clostridium composti sp. nov., a new anaerobic bacteria isolated from compost.	Shin Y, Paek J, Son AY, Kim H, Kook JK, Paek WK, Chang YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003074	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66777

Yeseul Shin, Jayoung Paek, Ah Young Son, Hongik Kim, Joong-Ki Kook, Woon Kee Paek and Young Hyo Chang: Clostridium composti sp. nov., a new anaerobic bacteria isolated from compost. IJSEM 68: 3869 - 3873 2018 ( DOI 10.1099/ijsem.0.003074 , PubMed 30358527 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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