Name: Olivibacter ginsenosidimutans BS18
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159786

Type strain:

Species: Olivibacter ginsenosidimutans

Strain Designation: BS18

Culture col. no.: KACC 16612, JCM 18200

Strain history: W.-T. Im BS18.

NCBI tax ID(s): 1176537 (species)

Section

Olivibacter ginsenosidimutans BS18 is an anaerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from compost from foodstuff waste.

colony-forming
Gram-negative
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Olivibacter*
	Species	**Olivibacter ginsenosidimutans**
	Full Scientific Name (LPSN)	Olivibacter ginsenosidimutans Siddiqi et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66581]	Gram stain	negative

[Ref.: #66581]	Cell length	1.5-2.5 mm

[Ref.: #66581]	Cell width	0.4-1.0 µm

[Ref.: #66581]	Cell shape	rod-shaped

[Ref.: #66581]	Colony color	milky-white
[Ref.: #66581]	Colony shape	circular

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #66581]	optimum	30 °C
[Ref.: #66581]	growth	10-45 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #66581]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #66581]			optimum	6-7
[Ref.: #66581]			growth	5.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66581]

Oxygen tolerance

anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66581]		NaCl		growth	0-7	%(w/v)

[Ref.: #66581]	Observation	The major polar lipids are phosphatidylethanolamine (PE) and one unidentified polar lipid (L5).
[Ref.: #67770]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66581]	2-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #66581]	3-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #66581]	4-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #66581]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #66581]	adipate ChEBI	-	assimilation
[Ref.: #66581]	butyrate ChEBI	-	assimilation
[Ref.: #66581]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #66581]	casein	-	hydrolysis
[Ref.: #66581]	chitin ChEBI	-	hydrolysis
[Ref.: #66581]	D-glucose ChEBI	+	assimilation
[Ref.: #66581]	D-mannitol ChEBI	-	assimilation
[Ref.: #66581]	D-mannitol ChEBI	+	assimilation
[Ref.: #66581]	D-mannose ChEBI	+	assimilation
[Ref.: #66581]	D-ribose ChEBI	+	assimilation
[Ref.: #66581]	D-sorbitol ChEBI	+	assimilation
[Ref.: #66581]	dna ChEBI	-	hydrolysis
[Ref.: #66581]	esculin ChEBI	+	hydrolysis
[Ref.: #66581]	gelatin ChEBI	+	hydrolysis
[Ref.: #66581]	gluconate ChEBI	-	assimilation
[Ref.: #66581]	glucose ChEBI	-	builds acid from
[Ref.: #66581]	glycogen ChEBI	-	assimilation
[Ref.: #66581]	itaconate ChEBI	+	assimilation
[Ref.: #66581]	L-alanine 4-nitroanilide	-	assimilation
[Ref.: #66581]	L-arabinose ChEBI	-	assimilation
[Ref.: #66581]	L-fucose ChEBI	+	assimilation
[Ref.: #66581]	L-histidine ChEBI	-	assimilation
[Ref.: #66581]	L-proline ChEBI	-	assimilation
[Ref.: #66581]	L-rhamnose ChEBI	-	assimilation
[Ref.: #66581]	malate ChEBI	-	assimilation
[Ref.: #66581]	malonate ChEBI	-	assimilation
[Ref.: #66581]	maltose ChEBI	-	assimilation
[Ref.: #66581]	maltose ChEBI	+	assimilation
[Ref.: #66581]	melibiose ChEBI	-	assimilation
[Ref.: #66581]	myo-inositol ChEBI	+	assimilation
[Ref.: #66581]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #66581]	nitrate ChEBI	-	reduction
[Ref.: #66581]	phenylacetate ChEBI	-	assimilation
[Ref.: #66581]	salicin ChEBI	+	assimilation
[Ref.: #66581]	sodium acetate ChEBI	-	assimilation
[Ref.: #66581]	sodium citrate ChEBI	-	assimilation
[Ref.: #66581]	sodium lactate ChEBI	-	assimilation
[Ref.: #66581]	sodium propionate ChEBI	-	assimilation
[Ref.: #66581]	starch ChEBI	-	hydrolysis
[Ref.: #66581]	suberic acid ChEBI	-	assimilation
[Ref.: #66581]	sucrose ChEBI	-	assimilation
[Ref.: #66581]	tween 80 ChEBI	-	hydrolysis
[Ref.: #66581]	valerate ChEBI	-	assimilation
[Ref.: #66581]	xylan ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #66581]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #66581]	acid phosphatase	+	3.1.3.2
[Ref.: #66581]	alkaline phosphatase	+	3.1.3.1
[Ref.: #66581]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #66581]	alpha-fucosidase	+	3.2.1.51
[Ref.: #66581]	alpha-galactosidase	+	3.2.1.22
[Ref.: #66581]	alpha-glucosidase	+	3.2.1.20
[Ref.: #66581]	alpha-mannosidase	+	3.2.1.24
[Ref.: #66581]	arginine dihydrolase	+	3.5.3.6
[Ref.: #66581]	beta-galactosidase	+	3.2.1.23
[Ref.: #66581]	beta-glucosidase	+	3.2.1.21
[Ref.: #66581]	beta-glucuronidase	+	3.2.1.31
[Ref.: #66581]	catalase	+	1.11.1.6
[Ref.: #66581]	cystine arylamidase	+	3.4.11.3
[Ref.: #66581]	cytochrome oxidase	+	1.9.3.1
[Ref.: #66581]	esterase	+
[Ref.: #66581]	esterase Lipase (C 8)	+
[Ref.: #66581]	leucine arylamidase	+	3.4.11.1
[Ref.: #66581]	lipase	-
[Ref.: #66581]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #66581]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #66581]	trypsin	+	3.4.21.4
[Ref.: #66581]	urease	+	3.5.1.5
[Ref.: #66581]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #66581]

Fatty acid	Percentage
C15:0 iso	39.3
C15:0 iso 2OH and/or C16:1 w7c	29.7
C17:0 iso 3OH	12.3
C17:1 iso w9c	3.9
C16:0	2.9
C16:0 2OH	2.8
C15:0 iso 3OH	2.1
C17:0 cyclo	2.1
C18:0	1.3
C14:0	0.8
C15:0 anteiso	0.8
C17:0 iso	0.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66581]	Sample type/isolated from	compost from foodstuff waste
[Ref.: #66581]	Geographic location (country and/or sea, region)	Jeju Island
[Ref.: #66581]	Country	Republic of Korea
[Ref.: #66581]	Country ISO 3 Code	KOR
[Ref.: #66581]	Continent	Asia
[Ref.: #66581]	Isolation/enrichment procedure	After serial dilution, the samples were plated on R2A (Difco) agar medium and incubated at 23-25°C for 5 days. Strain BS18 was routinely maintained on R2A agar at 30°C and was preserved at 80°C in R2A broth (Difco) supplemented with 20 % (v/v) glycerol.

[Ref.: #67770]	Sample type/isolated from	Compost from Jeju Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Composting
#Engineered	#Food production	#Food

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66581]	Olivibacter sp. BS18 16S ribosomal RNA gene, partial sequence	JQ349042	1445	ENA	1176537 tax ID

[Ref.: #67770]

GC-content

41.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #66581]

Culture collection no.

KACC 16612, JCM 18200

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Olivibacter ginsenosidimutans sp nov., with ginsenoside converting activity isolated from compost, and reclassification of Pseudosphingobacterium domesticum as Olivibacter domesticus comb. nov.	Siddiqi MZ, Liu Q, Lee SY, Choi KD, Im WT	Int J Syst Evol Microbiol	10.1099/ijsem.0.002819	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66581

Muhammad Zubair Siddiqi, Qingmei Liu, Soon Youl Lee, kang Duk Choi, Wan Taek Im: Olivibacter ginsenosidimutans sp nov., with ginsenoside converting activity isolated from compost, and reclassification of Pseudosphingobacterium domesticum as Olivibacter domesticus comb. nov. IJSEM 68: 2509 - 2514 2018 ( DOI 10.1099/ijsem.0.002819 , PubMed 29944109 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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