Zobellella maritima (KCTC 62272, JCM 32359, 102-Py4)

Name: Zobellella maritima (KCTC 62272, JCM 32359, 102-Py4)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159782

Type strain

Strain Designation 102-Py4

Culture col. no. KCTC 62272 JCM 32359 102-Py4 DSM 106043

NCBI tax ID(s) 2059725

Special Collections DSMZ JCM KCTC Literature strains

History B. S. Kim; Korea Univ., South Korea; 102-Py4. <- Kim Beom Seok, Korea Univ.

Links

Zobellella maritima 102-Py4 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from sediment of Sinduri beach in Taean.

Gram-negative motile rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 287593

KCTC 62272,JCM 32359

@ref 20215

Last LPSN update 2026-02-09 11:38:44

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Aeromonadales

Family Aeromonadaceae

Genus Zobellella

Species Zobellella maritima

Full scientific name Zobellella maritima Lee et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
66585	negative	1.1-1.4 µm	0.7-0.8 µm	rod-shaped	polar
125439	negative					99.7
125439						90.3

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
66585	3 mm	light yellow	circular	5 days	Marine agar (MA)

Culture and growth conditions

Culture medium

@ref	Name	Growth
66585	Marine agar (MA)

Culture temp

@ref	Growth	Type	Temperature (°C)
66585	positive	growth	10-45
66585	positive	optimum	28-37
67770	positive	growth	30
67771	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
66585	positive	optimum	6-9
66585	positive	growth	5-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
66585	aerobe
66585	facultative anaerobe
67771	aerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.6

Halophily

@ref	Salt	Growth	Tested relation	Concentration
66585	NaCl	positive	growth	0-5 %(w/v)
66585	NaCl	positive	optimum	1-3 %(w/v)

Observation

@ref	Observation
66585	NaCl is not an absolute requirement for growth.
66585	The phospholipids consist of phosphatidylethanolamine, phosphatidylglycerol and two unidentified amino phospholipids.

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66585	64552 ChEBI	2-hydroxybutyrate	+	carbon source
66585	16411 ChEBI	acetic acid	+	carbon source
66585	73706 ChEBI	bromosuccinate	+	carbon source
66585		casein	-	hydrolysis
66585	62968 ChEBI	cellulose	-	hydrolysis
66585	16899 ChEBI	D-mannitol	+	assimilation
66585	16024 ChEBI	D-mannose	+	carbon source
66585	17924 ChEBI	D-sorbitol	+	carbon source
66585	495056 ChEBI	gamma-cyclodextrin	+	carbon source
66585	17368 ChEBI	hypoxanthine	+	hydrolysis
66585	16977 ChEBI	L-alanine	+	carbon source
66585	17196 ChEBI	L-asparagine	+	carbon source
66585	29991 ChEBI	L-aspartate	+	carbon source
66585	29985 ChEBI	L-glutamate	+	carbon source
66585	17203 ChEBI	L-proline	+	carbon source
66585	62345 ChEBI	L-rhamnose	+	carbon source
66585	17115 ChEBI	L-serine	+	carbon source
66585	17895 ChEBI	L-tyrosine	-	hydrolysis
66585	25115 ChEBI	malate	+	assimilation
66585	51850 ChEBI	methyl pyruvate	+	carbon source
66585	75146 ChEBI	monomethyl succinate	+	carbon source
66585	17268 ChEBI	myo-inositol	+	carbon source
66585	59640 ChEBI	N-acetylglucosamine	+	assimilation
66585	17632 ChEBI	nitrate	+	reduction
66585	18401 ChEBI	phenylacetate	+	assimilation
66585	63043 ChEBI	potassium nitrate	-	growth
66585	17148 ChEBI	putrescine	+	carbon source
66585	53258 ChEBI	sodium citrate	+	assimilation
66585	143136 ChEBI	succinamate	+	carbon source
66585	30031 ChEBI	succinate	+	carbon source
66585	18186 ChEBI	tyrosine	-	hydrolysis
66585	16704 ChEBI	uridine	+	carbon source
66585	27248 ChEBI	urocanic acid	+	carbon source
66585	15318 ChEBI	xanthine	+	hydrolysis

Enzymes

@ref	Value	Activity	Ec
66585	alkaline phosphatase	+	3.1.3.1
66585	catalase	+	1.11.1.6
66585	cytochrome oxidase	+	1.9.3.1
66585	esterase (C 4)	+
66585	esterase Lipase (C 8)	+
66585	leucine arylamidase	+	3.4.11.1

Fatty acid profile

Metadata FA analysis

@ref

66585

Fatty acid	Percentage
one or more of C16:1 w7c and/or C16:1 w6c	29.5
C12:0	16.7
one or more of C18:1 w7c and/or C18:1 w6c	16.3
C16:0	9.8
one or more of C12:0 aldehyde and/or an unknown fa	6.7
one or more of iso-C17:1 w9c and/or 10-methyl C16:	1.9
C17:0 iso	1.8
C13:0 iso	1.7
C17:0	1.6
C17:1 w8c	1.5
C14:1 w5c	1.2
C15:0 iso 3OH	1.1
C16:0 iso	0.6
C14:0	0.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Coast
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture duration	Enrichment culture temperature	Isolation procedure	Geographic location
66585	sediment of Sinduri beach in Taean	Republic of Korea	KOR	Asia	35.9833	126.6 35.9833/126.6	7 days	28	The sediment sample was inoculated into separate Erlenmeyer flasks containing 100 ml of modified mineral salts basal (MSB) medium (20.0 g NaCl, 7.0 g Na2HPO4 12H2O, 1 g KH2PO4 , 10 mg CaCl2 2H2O, 1 mg FeCl3 , 20 mg MgSO4 7H2O, 1 g (NH4 ) 2SO4 and 1000 ml of distilled water; pH 7.0) supplemented with 20 mg of naphthalene, phenanthrene or pyrene as the sole carbon source.
67770	Sediment of Sinduri beach in Taean	Republic of Korea	KOR	Asia
67771	From beach sediment	Republic of Korea	KOR	Asia						Sindu-ri coast in Wonbok-myeon, Taean-gun, North Chungcheong Province

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM307503v1 assembly for Zobellella maritima 102-Py4	scaffold	GCA_003075035	2059725.3	2832309219	2059725	71.34

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66585	Zobellella maritima strain 102-Py4 16S ribosomal RNA gene, partial sequence	MG456893	1450		2059725

GC content

@ref	GC-content (mol%)	Method
66585	61.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Zobellella maritima 102-Py4
NCBI: GCA_003075035

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.60	no
125439	motility	BacteriaNetⓘ	yes	90.30	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	56.20	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Zobellella maritima sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium, isolated from beach sediment.	Lee DW, Lee H, Kwon BO, Khim JS, Yim UH, Park H, Park B, Choi IG, Kim BS, Kim JJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002825	2018
Phylogeny	Zobellella iuensis sp. nov., an aerobic denitrifying bacterium isolated from activated sludge.	Li J, Hu A, Liang X, Yang X, Jia Y, Yu CP	Int J Syst Evol Microbiol	10.1099/ijsem.0.005567	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66585	Dong Wan Lee, Hanbyul Lee, Bong-Oh Kwon, Jong Seong Khim, Un Hyuk Yim, Hongjae Park, Byeonghyeok Park, In-Geol Choi, Beom Seok Kim, Jae-Jin Kim: Zobellella maritima sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium, isolated from beach sediment. IJSEM 68: 2279 - 2284 2018 ( DOI 10.1099/ijsem.0.002825 , PubMed 29781802 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Zobellella maritima (KCTC 62272, JCM 32359, 102-Py4)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003075035

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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