Name: Zobellella maritima 102-Py4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159782

Type strain:

Species: Zobellella maritima

Strain Designation: 102-Py4

Culture col. no.: KCTC 62272, JCM 32359, DSM 106043

Strain history: <- Kim Beom Seok, Korea Univ.

NCBI tax ID(s): 2059725 (species)

Section

Zobellella maritima 102-Py4 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from sediment of Sinduri beach in Taean.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Aeromonadales*
	Family	*Aeromonadaceae*
	Genus	*Zobellella*
	Species	**Zobellella maritima**
	Full Scientific Name (LPSN)	Zobellella maritima Lee et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66585]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #66585]	Cell length	1.1-1.4 µm

[Ref.: #66585]	Cell width	0.7-0.8 µm

[Ref.: #66585]	Cell shape	rod-shaped

[Ref.: #66585]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.007

[Ref.: #66585]	Flagellum arrangement	polar

[Ref.: #66585]	Colony size	3 mm
[Ref.: #66585]	Colony color	light yellow
[Ref.: #66585]	Colony shape	circular
[Ref.: #66585]	Incubation period	5 days
[Ref.: #66585]	Cultivation medium used	Marine agar (MA)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66585]

Culture medium

Marine agar (MA)

[Ref.: #66585]

Culture medium growth

		Temperature
[Ref.: #66585]	growth	10-45 °C
[Ref.: #66585]	optimum	28-37 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #66585]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #66585]			optimum	6-9
[Ref.: #66585]			growth	5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66585]	Oxygen tolerance	aerobe
[Ref.: #66585]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66585]		NaCl		growth	0-5	%(w/v)
[Ref.: #66585]		NaCl		optimum	1-3	%(w/v)

[Ref.: #66585]	Observation	NaCl is not an absolute requirement for growth.
[Ref.: #66585]	Observation	The phospholipids consist of phosphatidylethanolamine, phosphatidylglycerol and two unidentified amino phospholipids.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66585]	2-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #66585]	acetic acid ChEBI	+	carbon source
[Ref.: #66585]	bromosuccinate ChEBI	+	carbon source
[Ref.: #66585]	casein	-	hydrolysis
[Ref.: #66585]	cellulose ChEBI	-	hydrolysis
[Ref.: #66585]	D-mannitol ChEBI	+	assimilation
[Ref.: #66585]	D-mannose ChEBI	+	carbon source
[Ref.: #66585]	D-sorbitol ChEBI	+	carbon source
[Ref.: #66585]	gamma-cyclodextrin ChEBI	+	carbon source
[Ref.: #66585]	hypoxanthine ChEBI	+	hydrolysis
[Ref.: #66585]	L-alanine ChEBI	+	carbon source
[Ref.: #66585]	L-asparagine ChEBI	+	carbon source
[Ref.: #66585]	L-aspartate ChEBI	+	carbon source
[Ref.: #66585]	L-glutamate ChEBI	+	carbon source
[Ref.: #66585]	L-proline ChEBI	+	carbon source
[Ref.: #66585]	L-rhamnose ChEBI	+	carbon source
[Ref.: #66585]	L-serine ChEBI	+	carbon source
[Ref.: #66585]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #66585]	malate ChEBI	+	assimilation
[Ref.: #66585]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #66585]	monomethyl succinate ChEBI	+	carbon source
[Ref.: #66585]	myo-inositol ChEBI	+	carbon source
[Ref.: #66585]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #66585]	nitrate ChEBI	+	reduction
[Ref.: #66585]	phenylacetate ChEBI	+	assimilation
[Ref.: #66585]	potassium nitrate ChEBI	-	growth
[Ref.: #66585]	putrescine ChEBI	+	carbon source
[Ref.: #66585]	sodium citrate ChEBI	+	assimilation
[Ref.: #66585]	succinamate ChEBI	+	carbon source
[Ref.: #66585]	succinate ChEBI	+	carbon source
[Ref.: #66585]	tyrosine ChEBI	-	hydrolysis
[Ref.: #66585]	uridine ChEBI	+	carbon source
[Ref.: #66585]	urocanic acid ChEBI	+	carbon source
[Ref.: #66585]	xanthine ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #66585]	alkaline phosphatase	+	3.1.3.1
[Ref.: #66585]	catalase	+	1.11.1.6
[Ref.: #66585]	cytochrome oxidase	+	1.9.3.1
[Ref.: #66585]	esterase (C 4)	+
[Ref.: #66585]	esterase Lipase (C 8)	+
[Ref.: #66585]	leucine arylamidase	+	3.4.11.1

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #66585]

Fatty acid	Percentage
one or more of C16:1 w7c and/or C16:1 w6c	29.5
C12:0	16.7
one or more of C18:1 w7c and/or C18:1 w6c	16.3
C16:0	9.8
one or more of C12:0 aldehyde and/or an unknown fa	6.7
one or more of iso-C17:1 w9c and/or 10-methyl C16:	1.9
C17:0 iso	1.8
C13:0 iso	1.7
C17:0	1.6
C17:1 w8c	1.5
C14:1 w5c	1.2
C15:0 iso 3OH	1.1
C16:0 iso	0.6
C14:0	0.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66585]	Sample type/isolated from	sediment of Sinduri beach in Taean
[Ref.: #66585]	Country	Republic of Korea
[Ref.: #66585]	Country ISO 3 Code	KOR
[Ref.: #66585]	Continent	Asia
[Ref.: #66585]	Geographic location	35.9833°/126.6000°
[Ref.: #66585]	Enrichment culture duration	7 days
[Ref.: #66585]	Enrichment culture temperature	28 ̊C
[Ref.: #66585]	Isolation/enrichment procedure	The sediment sample was inoculated into separate Erlenmeyer flasks containing 100 ml of modified mineral salts basal (MSB) medium (20.0 g NaCl, 7.0 g Na2HPO4 12H2O, 1 g KH2PO4 , 10 mg CaCl2 2H2O, 1 mg FeCl3 , 20 mg MgSO4 7H2O, 1 g (NH4 ) 2SO4 and 1000 ml of distilled water; pH 7.0) supplemented with 20 mg of naphthalene, phenanthrene or pyrene as the sole carbon source.

[Ref.: #67770]	Sample type/isolated from	Sediment of Sinduri beach in Taean
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From beach sediment
[Ref.: #67771]	Geographic location (country and/or sea, region)	Sindu-ri coast in Wonbok-myeon, Taean-gun, North Chungcheong Province
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Coast
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66585]	Zobellella sp. 102-Py4 16S ribosomal RNA gene, partial sequence	MG456893	1450	ENA	2059725 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Zobellella maritima 102-Py4	GCA_003075035	scaffold	GenBank	2059725 tax ID
[Ref.: #66792]	Zobellella maritima 102-Py4	2832309219	draft	JGI IMG/M	2059725 tax ID	*

[Ref.: #66585]

GC-content

61.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Zobellella maritima 102-Py4 NCBI: GCA_003075035.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #66585]

Culture collection no.

KCTC 62272, JCM 32359, DSM 106043

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Zobellella maritima sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium, isolated from beach sediment.	Lee DW, Lee H, Kwon BO, Khim JS, Yim UH, Park H, Park B, Choi IG, Kim BS, Kim JJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002825	2018	*
Phylogeny	Zobellella iuensis sp. nov., an aerobic denitrifying bacterium isolated from activated sludge.	Li J, Hu A, Liang X, Yang X, Jia Y, Yu CP	Int J Syst Evol Microbiol	10.1099/ijsem.0.005567	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66585

Dong Wan Lee, Hanbyul Lee, Bong-Oh Kwon, Jong Seong Khim, Un Hyuk Yim, Hongjae Park, Byeonghyeok Park, In-Geol Choi, Beom Seok Kim, Jae-Jin Kim: Zobellella maritima sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium, isolated from beach sediment. IJSEM 68: 2279 - 2284 2018 ( DOI 10.1099/ijsem.0.002825 , PubMed 29781802 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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