Name: Paracoccus salipaludis WN007
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159773

Type strain:

Species: Paracoccus salipaludis

Strain Designation: WN007

Culture col. no.: KCTC 52851, ACCC 19972

Strain history: <- Guishan Zhang, Institute of Agricultural Resources and Regional Planning

NCBI tax ID(s): 2032623 (species)

Section

Paracoccus salipaludis WN007 is an aerobe, Gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from From saline-alkali soil, E117.2.

coccus-shaped
colony-forming
Gram-negative
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	Rhodobacteraceae
	Genus	*Paracoccus*
	Species	**Paracoccus salipaludis**
	Full Scientific Name (PNU)	Paracoccus salipaludis Dong et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66769]	Gram stain	negative
[Ref.: #66769]	Cell length	1 µm
[Ref.: #66769]	Cell width	1 µm
[Ref.: #66769]	Cell shape	coccus-shaped
[Ref.: #66769]	Motility	no

[Ref.: #66769]	Cell shape	ovoid-shaped

[Ref.: #66769]	Colony size	3 mm
[Ref.: #66769]	Colony color	dull orange
[Ref.: #66769]	Colony shape	circular
[Ref.: #66769]	Incubation period	3 days
[Ref.: #66769]	Cultivation medium used	Y2A solid media

Information on culture and growth conditions Culture and growth conditions

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Culture medium

LB (Luria-Bertani) agar

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Culture medium growth

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Culture medium

PYG agar

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

VY/2 AGAR

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Culture medium growth

		Temperature
[Ref.: #66769]	growth	10-45 °C
[Ref.: #66769]	optimum	33-37 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #66769]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #66769]			optimum	7.5-8
[Ref.: #66769]			growth	6.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66769]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66769]		NaCl		growth	0-15	%(w/v)
[Ref.: #66769]		NaCl		optimum	2-4	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66769]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #66769]	alpha-D-glucose ChEBI	+	energy source
[Ref.: #66769]	arabinose ChEBI	+	assimilation
[Ref.: #66769]	casein	+	hydrolysis
[Ref.: #66769]	cellobiose ChEBI	+	carbon source
[Ref.: #66769]	cellobiose ChEBI	+	energy source
[Ref.: #66769]	D-fructose ChEBI	+	carbon source
[Ref.: #66769]	D-fructose ChEBI	+	energy source
[Ref.: #66769]	D-fucose ChEBI	+	carbon source
[Ref.: #66769]	D-fucose ChEBI	+	energy source
[Ref.: #66769]	D-galactose ChEBI	-	carbon source
[Ref.: #66769]	D-galactose ChEBI	-	energy source
[Ref.: #66769]	D-mannose ChEBI	+	carbon source
[Ref.: #66769]	D-mannose ChEBI	+	energy source
[Ref.: #66769]	D-sorbitol ChEBI	+	carbon source
[Ref.: #66769]	D-sorbitol ChEBI	+	energy source
[Ref.: #66769]	dextrin ChEBI	+	carbon source
[Ref.: #66769]	dextrin ChEBI	+	energy source
[Ref.: #66769]	esculin ChEBI	-	hydrolysis
[Ref.: #66769]	gelatin ChEBI	+	hydrolysis
[Ref.: #66769]	glucose ChEBI	+	assimilation
[Ref.: #66769]	glucose ChEBI	+	fermentation
[Ref.: #66769]	glycerol ChEBI	+	carbon source
[Ref.: #66769]	glycerol ChEBI	+	energy source
[Ref.: #66769]	malate ChEBI	-	assimilation
[Ref.: #66769]	maltose ChEBI	+	assimilation
[Ref.: #66769]	maltose ChEBI	+	carbon source
[Ref.: #66769]	maltose ChEBI	+	energy source
[Ref.: #66769]	mannitol ChEBI	-	assimilation
[Ref.: #66769]	mannose ChEBI	+	assimilation
[Ref.: #66769]	nitrate ChEBI	-	reduction
[Ref.: #66769]	phenylacetate ChEBI	-	assimilation
[Ref.: #66769]	sodium citrate ChEBI	+	assimilation
[Ref.: #66769]	starch ChEBI	-	hydrolysis
[Ref.: #66769]	sucrose ChEBI	-	carbon source
[Ref.: #66769]	sucrose ChEBI	-	energy source
[Ref.: #66769]	trehalose ChEBI	-	carbon source
[Ref.: #66769]	trehalose ChEBI	-	energy source
[Ref.: #66769]	tween 80 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #66769]		indole ChEBI

	Enzyme	Enzyme activity	EC number
[Ref.: #66769]	acid phosphatase	-	3.1.3.2
[Ref.: #66769]	alkaline phosphatase	+	3.1.3.1
[Ref.: #66769]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #66769]	alpha-galactosidase	-	3.2.1.22
[Ref.: #66769]	alpha-glucosidase	+	3.2.1.20
[Ref.: #66769]	alpha-mannosidase	+	3.2.1.24
[Ref.: #66769]	arginine dihydrolase	+	3.5.3.6
[Ref.: #66769]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #66769]	beta-galactosidase	-	3.2.1.23
[Ref.: #66769]	beta-glucosidase	-	3.2.1.21
[Ref.: #66769]	beta-glucuronidase	-	3.2.1.31
[Ref.: #66769]	catalase	+	1.11.1.6
[Ref.: #66769]	cystine arylamidase	+	3.4.11.3
[Ref.: #66769]	cytochrome oxidase	+	1.9.3.1
[Ref.: #66769]	esterase (C 4)	+
[Ref.: #66769]	esterase Lipase (C 8)	+
[Ref.: #66769]	leucine arylamidase	-	3.4.11.1
[Ref.: #66769]	lipase (C 14)	+
[Ref.: #66769]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #66769]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #66769]	urease	-	3.5.1.5
[Ref.: #66769]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From saline-alkali soil, E117.2
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia

[Ref.: #66769]	Sample type/isolated from	natural saline-alkali wetland soil (30°C, salinity 4-13.5 % and pH 7.8-9.3)
[Ref.: #66769]	Sampling date	2015-06
[Ref.: #66769]	Geographic location (country and/or sea, region)	Binhai new district, Tianjin
[Ref.: #66769]	Country	China
[Ref.: #66769]	Country ISO 3 Code	CHN
[Ref.: #66769]	Continent	Asia
[Ref.: #66769]	Geographic location	38.7666°/117.2170°
[Ref.: #66769]	Enrichment culture	R2A
[Ref.: #66769]	Enrichment culture composition	(for 1 l medium containing the following reagents: 0.5 g glucose, 0.5 g soluble starch, 0.5 g casein hydrolysate, 0.5 g yeast extract, 0.5 g peptone, 0.05 g MgSO4 x 7H2O, 0.3 g KH2PO4 , with the pH adjusted to 8.0 prior to autoclaving) amended with a final concentration of 10.0 % NaCl
[Ref.: #66769]	Enrichment culture duration	1 week
[Ref.: #66769]	Isolation/enrichment procedure	To isolate halophilic heterotrophic microorganisms, 1.0 g soil was placed in a sterile 30 ml glass tube for enrichment using Reasoner's 2A medium for 1 week and subsequently purified into single colonies.
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Wetland (Swamp)
#Condition	#Alkaline	-
#Condition	#Saline	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66769]	Paracoccus sp. strain WN007 16S ribosomal RNA gene, partial sequence	MF782381	1451	ENA	2032623 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paracoccus salipaludis WN007	GCA_002287065	contig	GenBank	2032623 tax ID	*
[Ref.: #66792]	Paracoccus salipaludis WN007	2855052972	draft	JGI IMG/M	2032623 tax ID	*

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GC-content

63.9 mol%

genome sequence analysis

Availability in culture collections External links

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Culture collection no.

KCTC 52851, ACCC 19972

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paracoccus salipaludis sp. nov., isolated from saline-alkaline soil.	Dong X, Zhang G, Xiong Q, Liu D, Wang D, Liu Y, Wu G, Li P, Luo Y, Zhang R	Int J Syst Evol Microbiol	10.1099/ijsem.0.003065	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66769

Xiaoyan Dong, Guishan Zhang, Qin Xiong, Di Liu, Dandan Wang, Yunpeng Liu, Gengwei Wu, Pan Li, Yu Luo, Ruifu Zhang: Paracoccus salipaludis sp. nov., isolated from saline alkaline soil. IJSEM 68: 3812 - 3817 2018 ( DOI 10.1099/ijsem.0.003065 , PubMed 30325298 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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