Name: Alcanivorax indicus SW127
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159770

Type strain:

Species: Alcanivorax indicus

Strain Designation: SW127

Culture col. no.: CGMCC 1.16233, KCTC 62652

Strain history: <- Lei Song, Institute of Microbiology, Chinese Academy of Sciences

NCBI tax ID(s): 2202653 (species)

Section

Alcanivorax indicus SW127 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from seawater sample .

colony-forming
Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Alcanivoracaceae*
	Genus	*Alcanivorax*
	Species	**Alcanivorax indicus**
	Full Scientific Name (LPSN)	Alcanivorax indicus Song et al. 2018

Synonym

Isoalcanivorax indicus

Information on morphological and physiological properties Morphology

[Ref.: #66766]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.981

[Ref.: #66766]	Cell shape	rod-shaped

[Ref.: #66766]	Motility	yes

[Ref.: #66766]	Flagellum arrangement	peritrichous

[Ref.: #66766]	Colony color	white
[Ref.: #66766]	Colony shape	circular
[Ref.: #66766]	Incubation period	3 days
[Ref.: #66766]	Cultivation medium used	216L agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66766]

Culture medium

216L agar

[Ref.: #66766]

Culture medium growth

		Temperature
[Ref.: #66766]	optimum	30 °C
[Ref.: #66766]	growth	8-42 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #66766]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #66766]			optimum	7.5
[Ref.: #66766]			growth	5.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66766]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #66766]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.977
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66766]		NaCl		growth	0.5-11	%(w/v)
[Ref.: #66766]		NaCl		optimum	3-4	%(w/v)

[Ref.: #66766]	Observation	H2S is not produced from thiosulphate.
[Ref.: #66766]	Observation	Grows in ASM medium with n-alkane as carbon source with chain lengths from C10 to C32.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66766]	(R)-malic acid ChEBI	-	carbon source
[Ref.: #66766]	(S)-lactate ChEBI	-	carbon source
[Ref.: #66766]	(S)-malic acid ChEBI	-	carbon source
[Ref.: #66766]	2-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #66766]	2-oxobutanoate ChEBI	+	carbon source
[Ref.: #66766]	2-oxoglutarate ChEBI	-	carbon source
[Ref.: #66766]	3-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #66766]	3-O-methyl-D-glucose ChEBI	-	carbon source
[Ref.: #66766]	4-hydroxyphenylacetic acid ChEBI	-	carbon source
[Ref.: #66766]	acetic acid ChEBI	-	carbon source
[Ref.: #66766]	acetoacetate ChEBI	+	carbon source
[Ref.: #66766]	alpha-D-glucose ChEBI	-	carbon source
[Ref.: #66766]	bromosuccinate ChEBI	-	carbon source
[Ref.: #66766]	casein	+	hydrolysis
[Ref.: #66766]	cellobiose ChEBI	-	carbon source
[Ref.: #66766]	citric acid ChEBI	-	carbon source
[Ref.: #66766]	D-arabitol ChEBI	-	carbon source
[Ref.: #66766]	D-aspartate ChEBI	-	carbon source
[Ref.: #66766]	D-fructose ChEBI	-	carbon source
[Ref.: #66766]	D-fructose 6-phosphate ChEBI	-	carbon source
[Ref.: #66766]	D-fucose ChEBI	-	carbon source
[Ref.: #66766]	D-galactose ChEBI	-	carbon source
[Ref.: #66766]	D-galacturonic acid ChEBI	-	carbon source
[Ref.: #66766]	D-glucarate ChEBI	-	carbon source
[Ref.: #66766]	D-gluconate ChEBI	-	carbon source
[Ref.: #66766]	D-glucose 6-phosphate ChEBI	-	carbon source
[Ref.: #66766]	D-glucuronate ChEBI	-	carbon source
[Ref.: #66766]	D-mannitol ChEBI	-	carbon source
[Ref.: #66766]	D-mannose ChEBI	-	carbon source
[Ref.: #66766]	D-serine ChEBI	-	carbon source
[Ref.: #66766]	D-sorbitol ChEBI	-	carbon source
[Ref.: #66766]	D-trehalose ChEBI	-	carbon source
[Ref.: #66766]	dextrin ChEBI	+	carbon source
[Ref.: #66766]	esculin ChEBI	+	hydrolysis
[Ref.: #66766]	formate ChEBI	-	carbon source
[Ref.: #66766]	galactarate ChEBI	-	carbon source
[Ref.: #66766]	gamma-aminobutyric acid ChEBI	-	carbon source
[Ref.: #66766]	gelatin ChEBI	-	carbon source
[Ref.: #66766]	gelatin ChEBI	+	hydrolysis
[Ref.: #66766]	gentiobiose ChEBI	-	carbon source
[Ref.: #66766]	glucuronamide ChEBI	+	carbon source
[Ref.: #66766]	glycerol ChEBI	-	carbon source
[Ref.: #66766]	glycine-proline ChEBI	-	carbon source
[Ref.: #66766]	inosine ChEBI	-	carbon source
[Ref.: #66766]	L-alanine ChEBI	-	carbon source
[Ref.: #66766]	L-arginine ChEBI	-	carbon source
[Ref.: #66766]	L-aspartate ChEBI	-	carbon source
[Ref.: #66766]	L-fucose ChEBI	-	carbon source
[Ref.: #66766]	L-galactonic acid gamma-lactone ChEBI	-	carbon source
[Ref.: #66766]	L-glutamate ChEBI	-	carbon source
[Ref.: #66766]	L-histidine ChEBI	-	carbon source
[Ref.: #66766]	L-pyroglutamic acid ChEBI	-	carbon source
[Ref.: #66766]	L-rhamnose ChEBI	-	carbon source
[Ref.: #66766]	L-serine ChEBI	-	carbon source
[Ref.: #66766]	lactose ChEBI	-	carbon source
[Ref.: #66766]	maltose ChEBI	-	carbon source
[Ref.: #66766]	melibiose ChEBI	-	carbon source
[Ref.: #66766]	methyl (R)-lactate ChEBI	-	carbon source
[Ref.: #66766]	methyl beta-D-glucopyranoside ChEBI	-	carbon source
[Ref.: #66766]	methyl pyruvate ChEBI	-	carbon source
[Ref.: #66766]	myo-inositol ChEBI	-	carbon source
[Ref.: #66766]	N-acetyl-D-mannosamine ChEBI	-	carbon source
[Ref.: #66766]	N-acetylgalactosamine ChEBI	-	carbon source
[Ref.: #66766]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #66766]	n-acetylneuraminate ChEBI	-	carbon source
[Ref.: #66766]	nitrate ChEBI	+	reduction
[Ref.: #66766]	pectin ChEBI	-	carbon source
[Ref.: #66766]	propionate ChEBI	-	carbon source
[Ref.: #66766]	quinate ChEBI	-	carbon source
[Ref.: #66766]	raffinose ChEBI	-	carbon source
[Ref.: #66766]	salicin ChEBI	-	carbon source
[Ref.: #66766]	stachyose ChEBI	-	carbon source
[Ref.: #66766]	starch ChEBI	-	hydrolysis
[Ref.: #66766]	sucrose ChEBI	-	carbon source
[Ref.: #66766]	tryptophan ChEBI	-	energy source
[Ref.: #66766]	turanose ChEBI	-	carbon source
[Ref.: #66766]	tween 40 ChEBI	+	carbon source
[Ref.: #66766]	tween 80 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #66766]	acetoin ChEBI	yes
[Ref.: #66766]	hydrogen sulfide ChEBI	no
[Ref.: #66766]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #66766]		acetoin ChEBI	+
[Ref.: #66766]		indole ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #66766]	acid phosphatase	+	3.1.3.2
[Ref.: #66766]	alkaline phosphatase	+	3.1.3.1
[Ref.: #66766]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #66766]	alpha-fucosidase	-	3.2.1.51
[Ref.: #66766]	alpha-galactosidase	-	3.2.1.22
[Ref.: #66766]	alpha-glucosidase	-	3.2.1.20
[Ref.: #66766]	alpha-mannosidase	-	3.2.1.24
[Ref.: #66766]	arginine dihydrolase	+	3.5.3.6
[Ref.: #66766]	beta-galactosidase	+	3.2.1.23
[Ref.: #66766]	beta-glucosidase	-	3.2.1.21
[Ref.: #66766]	beta-glucuronidase	-	3.2.1.31
[Ref.: #66766]	catalase	+	1.11.1.6
[Ref.: #66766]	cystine arylamidase	+	3.4.11.3
[Ref.: #66766]	cytochrome oxidase	+	1.9.3.1
[Ref.: #66766]	esterase (C 4)	+
[Ref.: #66766]	esterase Lipase (C 8)	+
[Ref.: #66766]	leucine arylamidase	+	3.4.11.1
[Ref.: #66766]	lipase (C 14)	+
[Ref.: #66766]	lysine decarboxylase	-	4.1.1.18
[Ref.: #66766]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #66766]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #66766]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #66766]	trypsin	-	3.4.21.4
[Ref.: #66766]	tryptophan deaminase	-	4.1.99.1
[Ref.: #66766]	urease	-	3.5.1.5
[Ref.: #66766]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #66766]

Fatty acid	Percentage
C18:1 w7c and/or C18:1 w6c	44.9
C16:0	25.2
C12:0	9
C12:0 3OH	8.1
C16:1 w7c and/or C16:1 w6c	4
C18:1 w9c	2.5
C17:1 iso w9c / C16:0 10-methyl	2.3
C14:0	2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66766]	Sample type/isolated from	seawater sample (depth 1500m)
[Ref.: #66766]	Country	Indian Ocean
[Ref.: #66766]	Geographic location	3.7080°/63.8311°
[Ref.: #66766]	Enrichment culture	marine agar 2216
[Ref.: #66766]	Isolation/enrichment procedure	serial dilution and plating method

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Northwest Indian Ocean
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66766]	Alcanivorax sp. strain SW127 16S ribosomal RNA gene, partial sequence	MH279472	1495	ENA	2202653 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Isoalcanivorax indicus SW127	GCA_003259185	contig	GenBank	2202653 tax ID	*
[Ref.: #66792]	Alcanivorax sp. SW127	2202653.3	wgs	PATRIC	2202653 tax ID	*
[Ref.: #66792]	Alcanivorax indicus SW127	2883121650	draft	JGI IMG/M	2202653 tax ID	*

[Ref.: #66766]

GC-content

62.8 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alcanivorax sp. SW127 PATRIC: 2202653.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alcanivorax sp. SW127 PATRIC: 2202653.3
[Ref.: #69480]	motile	no	52.383	yes
[Ref.: #69480]	gram-positive	no	98.892	yes
[Ref.: #69480]	anaerobic	no	97.984	yes
[Ref.: #69480]	aerobic	yes	90.9	yes
[Ref.: #69480]	halophile	yes	86.351	no
[Ref.: #69480]	spore-forming	no	96.412	yes
[Ref.: #69480]	glucose-util	no	83.796	yes
[Ref.: #69480]	flagellated	no	61.435	yes
[Ref.: #69480]	thermophile	no	98.321	yes
[Ref.: #69480]	glucose-ferment	no	91.863	no

Availability in culture collections External links

[Ref.: #66766]

Culture collection no.

CGMCC 1.16233, KCTC 62652

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alcanivorax limicola sp. nov., isolated from a soda alkali-saline soil.	Zhu L, Wang Y, Ding Y, Luo K, Yang B, Yang S, Liu S, Cui H, Wei W	Arch Microbiol	10.1007/s00203-021-02638-3	2021	*
Phylogeny	Alcanivorax indicus sp. nov., isolated from seawater.	Song L, Liu H, Cai S, Huang Y, Dai X, Zhou Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003058	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66766

Lei Song, Hongcan Liu, Shichun Cai, Ying Huang, Xin Dai, Yuguang Zhou: Alcanivorax indicus sp. nov., isolated from seawater. IJSEM 68: 3785 - 3789 2018 ( DOI 10.1099/ijsem.0.003058 , PubMed 30307386 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Alcanivorax sp. SW127

Alcanivorax sp. SW127

Change proposal

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