Winogradskyella aurantiaca (KACC 18883, KCTC 52240, JCM 31383)

Name: Winogradskyella aurantiaca (KACC 18883, KCTC 52240, JCM 31383)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159763

Type strain

Culture col. no. KACC 18883 KCTC 52240 JCM 31383 IMCC 20180

NCBI tax ID(s) 2219558

Special Collections JCM KCTC Literature strains

Links

Winogradskyella aurantiaca KACC 18883 is an aerobe, chemoheterotroph, mesophilic prokaryote that forms circular colonies and was isolated from seawater sample .

Gram-negative motile rod-shaped colony-forming aerobe chemoheterotroph mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 24560

KCTC 52240,JCM 31383

@ref 20215

Last LPSN update 2025-12-16 10:08:20

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Winogradskyella

Species Winogradskyella aurantiaca

Full scientific name Winogradskyella aurantiaca Song et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
66699	negative	1.6-1.7 µm	0.5-0.6 µm	rod-shaped	gliding
125439	negative					93.5
125438						95
125438	negative					98.981

Colony morphology

@ref	Colony color	Colony shape	Incubation period	Medium used
66699	orange	circular	7 days	Marine agar (MA) 2216

Pigmentation

@ref	Production	Name
66699		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth
66699	Marine agar (MA) 2216

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66699	positive	optimum	25	mesophilic
66699	positive	growth	20-30
67770	positive	growth	25	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
66699	positive	optimum	8.5	alkaliphile
66699	positive	growth	7-9

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
66699	aerobe
125439	obligate aerobe	97.4

Nutrition type

66699

Typechemoheterotroph

Spore formation

@ref	Spore formation	Confidence
125438		93.333

Halophily

@ref	Salt	Growth	Tested relation	Concentration
66699	NaCl	positive	growth	1-3.5 %
66699	NaCl	positive	optimum	3 %

Observation

67770

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66699	40585 ChEBI	alpha-cyclodextrin	+	oxidation
66699	17925 ChEBI	alpha-D-glucose	+	oxidation
66699	85146 ChEBI	carboxymethylcellulose	+	hydrolysis
66699		casein	-	hydrolysis
66699	17029 ChEBI	chitin	-	hydrolysis
66699	53258 ChEBI	citric acid	+	oxidation
66699	30612 ChEBI	D-glucarate	+	oxidation
66699	16991 ChEBI	dna	-	hydrolysis
66699	4853 ChEBI	esculin	-	hydrolysis
66699	17234 ChEBI	glucose	-	builds acid from
66699	28087 ChEBI	glycogen	+	oxidation
66699	17306 ChEBI	maltose	+	oxidation
66699	17632 ChEBI	nitrate	-	reduction
66699	28017 ChEBI	starch	-	hydrolysis
66699	53424 ChEBI	tween 20	-	hydrolysis
66699	53426 ChEBI	tween 80	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
66699	16136 ChEBI	hydrogen sulfide
66699	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
66699	acid phosphatase	+	3.1.3.2
66699	alkaline phosphatase	+	3.1.3.1
66699	alpha-chymotrypsin	+	3.4.21.1
66699	alpha-fucosidase	-	3.2.1.51
66699	alpha-galactosidase	-	3.2.1.22
66699	alpha-glucosidase	-	3.2.1.20
66699	alpha-mannosidase	-	3.2.1.24
66699	arginine dihydrolase	-	3.5.3.6
66699	beta-galactosidase	-	3.2.1.23
66699	beta-glucosidase	-	3.2.1.21
66699	beta-glucuronidase	-	3.2.1.31
66699	catalase	+	1.11.1.6
66699	cystine arylamidase	+	3.4.11.3
66699	cytochrome oxidase	+	1.9.3.1
66699	esterase (C 4)	+
66699	esterase Lipase (C 8)	+
66699	gelatinase	-
66699	leucine arylamidase	+	3.4.11.1
66699	lipase (C 14)	+
66699	N-acetyl-beta-glucosaminidase	+	3.2.1.52
66699	naphthol-AS-BI-phosphohydrolase	+
66699	trypsin	+	3.4.21.4
66699	urease	-	3.5.1.5
66699	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

66699

Fatty acid	Percentage
C15:1 iso G	20.7
C16:1 w7c and/or C16:1 w6c	17
C15:0 iso	15
C17:0 iso 3OH	10.8
C16:0 iso 3OH	10
C15:0 iso 3OH	6.9
C16:0 iso	4.2
C14:0 iso	2.7
C16:0 iso G	2.3
C15:0 anteiso	2
C14:0 iso E	2
C17:1 w6c	1.9
C14:0 iso 3OH	1.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
66699	seawater sample (depth, 1m)	2012-05	coast of the East Sea, Yeongdeok	Republic of Korea	KOR	Asia	36.4133	129.584 36.4133/129.584	R2A	diluted 1:10 (v/v) with aged seawater	2 weeks	20	serial dilution
67770	Seawater		Yeongdeok	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence KX061440 (>99% sequence identity) for Winogradskyella aurantiaca subclade from Microbeatlas

Aquatic Samples	4377
Soil Samples	41
Animal Samples	87
Plant Samples	6
Total Samples	4511

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM336272v1 assembly for Winogradskyella aurantiaca IMCC20180	contig	GCA_003362725	2219558.3	2837482949	2219558	74.95

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66699	Winogradskyella aurantiaca strain IMCC20180 16S ribosomal RNA gene, partial sequence	KX061440	1450		2219558

GC content

@ref	GC-content (mol%)	Method
66699	37.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Winogradskyella aurantiaca IMCC20180
NCBI: GCA_003362725

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	85.30	no
125439	motility	BacteriaNetⓘ	no	68.20	no
125439	gram_stain	BacteriaNetⓘ	negative	93.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Winogradskyella aurantiaca IMCC20180
NCBI: GCA_003362725.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.98	yes
125438	anaerobic	anaerobicⓘ	no	99.31	yes
125438	aerobic	aerobicⓘ	yes	85.94	yes
125438	spore-forming	spore-formingⓘ	no	93.33	no
125438	thermophilic	thermophileⓘ	no	97.58	yes
125438	flagellated	motile2+ⓘ	no	95.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Winogradskyella aurantiaca sp. nov., isolated from seawater.	Song J, Jeon HT, Lim Y, Joung Y, Cho JC	Int J Syst Evol Microbiol	10.1099/ijsem.0.002977	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66699	Jaeho Song, Hyoung Tae Jeon, Yeonjung Lim, Yochan Joung, Jang-Cheon Cho: Winogradskyella aurantiaca sp. nov., isolated from seawater. IJSEM 68: 3260 - 3265 2018 ( DOI 10.1099/ijsem.0.002977 , PubMed 30156531 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Winogradskyella aurantiaca (KACC 18883, KCTC 52240, JCM 31383)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile?

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003362725

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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Fatty acid profile