Haloplanus salinarum (KCTC 4239, JCM 31425, MBLA0036)

Name: Haloplanus salinarum (KCTC 4239, JCM 31425, MBLA0036)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159759

Type strain

Strain Designation MBLA0036

Culture col. no. KCTC 4239 JCM 31425 MBLA0036

NCBI tax ID(s) 1816183

Special Collections JCM KCTC Literature strains

History M.-J. Seo; Div. of Bioeng., Incheon Natl. Univ., South Korea; MBLA0036.

Links

Haloplanus salinarum MBLA0036 is a halophilic, Gram-negative, motile archaeon that forms circular colonies and was isolated from crude solar salt sample.

Gram-negative motile colony-forming halophilic genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 395503

JCM 31425

@ref 20215

Last LPSN update 2026-02-09 11:38:44

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloferacaceae

Genus Haloplanus

Species Haloplanus salinarum

Full scientific name Haloplanus salinarum Hwang et al. 2017

Synonyms (1)

Haloplanus rallus

BacDive ID	Other strains from **Haloplanus salinarum** (1)	Type strain
158747	H. salinarum SP28, JCM 31424, KCCM 43210 (type strain)

Morphology

Cell morphology

@ref	Gram stain	Motility
66694	negative

Colony morphology

@ref	Colony color	Colony shape	Medium used
66694	red	circular	agar

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition
66694	agar		containing 20 % (w/v) NaCl

Culture temp

@ref	Growth	Type	Temperature (°C)
66694	positive	optimum	37
66694	positive	growth	15-55
67770	positive	growth	37

Culture pH

@ref	Ability	Type	PH	PH range
66694	positive	optimum	7
66694	positive	growth	6-9	alkaliphile

Physiology and metabolism

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
66694	halophilic	NaCl	positive	growth	10-30 %(w/v)
66694	halophilic	NaCl	positive	optimum	15 %(w/v)
66694		MgSO4x7H2O	positive	growth	0-0.5 M
66694		MgSO4x7H2O	positive	optimum	0.2 M

Observation

@ref	Observation
66694	Morphology is pleomorphic (2.0-2.3 µm in diameter) and flat under optimal growth conditions.
66694	Cells contains gas vesicles.
66694	Lyses in distilled water, with minimal NaCl concentration of 5 % (w/v) required to prevent cell lysis.
66694	Does not use nitrate, L-arginine, DMSO or TMAO as electron acceptors under anaerobic conditions.
67770	quinones: MK-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
66694	16411 ChEBI	acetic acid	+	builds acid from
66694	16411 ChEBI	acetic acid	+	carbon source
66694	16411 ChEBI	acetic acid	+	energy source
66694		casein	-	hydrolysis
66694	53258 ChEBI	citric acid	-	carbon source
66694	53258 ChEBI	citric acid	-	energy source
66694	16991 ChEBI	dna	-	hydrolysis
66694	4853 ChEBI	esculin	-	hydrolysis
66694	29806 ChEBI	fumarate	-	builds acid from
66694	29806 ChEBI	fumarate	+	carbon source
66694	29806 ChEBI	fumarate	+	energy source
66694	5291 ChEBI	gelatin	-	hydrolysis
66694	17234 ChEBI	glucose	-	carbon source
66694	17234 ChEBI	glucose	-	energy source
66694	17234 ChEBI	glucose	-	fermentation
66694	29987 ChEBI	glutamate	-	builds acid from
66694	17754 ChEBI	glycerol	-	carbon source
66694	17754 ChEBI	glycerol	-	energy source
66694	15428 ChEBI	glycine	-	carbon source
66694	15428 ChEBI	glycine	-	energy source
66694	16977 ChEBI	L-alanine	-	carbon source
66694	16977 ChEBI	L-alanine	-	energy source
66694	16467 ChEBI	L-arginine	-	carbon source
66694	16467 ChEBI	L-arginine	-	energy source
66694	29991 ChEBI	L-aspartate	-	carbon source
66694	29991 ChEBI	L-aspartate	-	energy source
66694	29985 ChEBI	L-glutamate	+	carbon source
66694	29985 ChEBI	L-glutamate	+	energy source
66694	18019 ChEBI	L-lysine	-	carbon source
66694	18019 ChEBI	L-lysine	-	energy source
66694	24996 ChEBI	lactate	+	builds acid from
66694	24996 ChEBI	lactate	+	carbon source
66694	24996 ChEBI	lactate	+	energy source
66694	17716 ChEBI	lactose	-	carbon source
66694	17716 ChEBI	lactose	-	energy source
66694	18420 ChEBI	magnesium(2+)	-	required for growth
66694	25115 ChEBI	malate	-	builds acid from
66694	17306 ChEBI	maltose	-	builds acid from
66694	17306 ChEBI	maltose	+	carbon source
66694	17306 ChEBI	maltose	+	energy source
66694	29864 ChEBI	mannitol	-	carbon source
66694	29864 ChEBI	mannitol	-	energy source
66694	17632 ChEBI	nitrate	-	reduction
66694	15361 ChEBI	pyruvate	+	builds acid from
66694	15361 ChEBI	pyruvate	+	carbon source
66694	15361 ChEBI	pyruvate	+	energy source
66694	30911 ChEBI	sorbitol	-	carbon source
66694	30911 ChEBI	sorbitol	-	energy source
66694	28017 ChEBI	starch	-	carbon source
66694	28017 ChEBI	starch	-	energy source
66694	28017 ChEBI	starch	-	hydrolysis
66694	30031 ChEBI	succinate	-	builds acid from
66694	30031 ChEBI	succinate	+	carbon source
66694	30031 ChEBI	succinate	+	energy source
66694	17992 ChEBI	sucrose	-	carbon source
66694	17992 ChEBI	sucrose	-	energy source
66694	53424 ChEBI	tween 20	-	hydrolysis
66694	53423 ChEBI	tween 40	-	hydrolysis
66694	53426 ChEBI	tween 80	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
66694	338412	(-)-anisomycin	50 µg (disc)
66694	28971	ampicillin		10 µg (disc)
66694	3393	carbenicillin		100 µg (disc)
66694	3542	cephalothin		30 µg (disc)
66694	100241	ciprofloxacin	10 µg (disc)
66694	48923	erythromycin	25 µg (disc)
66694	17833	gentamicin		30 µg (disc)
66694	6104	kanamycin		30 µg (disc)
66694	6472	lincomycin		15 µg (disc)
66694	7507	neomycin		30 µg (disc)
66694	100246	norfloxacin		20 µg (disc)
66694	28368	novobiocin	10 µg (disc)
66694	18208	penicillin g		20 Unit (disc)
66694	8309	polymyxin b		100 Unit (disc)
66694	17076	streptomycin		50 µg (disc)
66694	27902	tetracycline		30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite
66694	15688 ChEBI	acetoin
66694	16136 ChEBI	hydrogen sulfide
66694	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
66694	15688 ChEBI	acetoin	-
66694	17234 ChEBI	glucose		-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Condition	#Saline

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
66694	crude solar salt sample	Sorae solar saltern near Incheon	Republic of Korea	KOR	Asia	37.4111	126.745 37.4111/126.745	DB Characterization Medium No. 2	(per litre): 833 ml MDS salt water (7 g KCl, 35 g MgSO4 x7H2O, 30 g MgCl2 x 6H2O, 240 g NaCl, 5 ml 1 M CaCl2 solution), 1 ml FeCl 2 solution, 1 ml trace element solution, 0.25 g peptone (Oxoid), 0.05 g yeast extract (Difco), 5 ml 1 M NH4Cl, 2 ml potassium phosphate buffer, 3 ml vitamin solution and 10 ml 1 M sodium pyruvate solution) with 2 % (w/v) agar adjusted to pH 7.5	4 weeks	37	Solar salt samples were collected and serially diluted using 20 % (w/v) NaCl saline solution, then spread onto DB Characterization Medium No. 2 and inoculated plates were subsequently incubated at 37°C for 4 weeks.
67770	Sorae solar saltern near Incheon		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence MH134500 (>99% sequence identity) for Haloplanus from Microbeatlas

Aquatic Samples	25
Soil Samples	1
Animal Samples
Plant Samples
Total Samples	26

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM976227v1 assembly for Haloplanus rallus MBLA0036	complete	GCA_009762275	1816183.3	2989238759	1816183	97.79

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
66694	Haloplanus rallus from South Korea 16S ribosomal RNA (rrnA) gene, partial sequence	KU933931	1470	1816183
67770	Haloplanus rallus strain MBLA0036 16S ribosomal RNA (rrnB) gene, partial sequence	MH134498	1470	1816183
67770	Haloplanus rallus strain MBLA0036 16S ribosomal RNA (rrnC) gene, partial sequence	MH134500	1432	1816183

GC content

@ref	GC-content (mol%)	Method
66694	66.5	high performance liquid chromatography (HPLC)
67770	65.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Haloplanus rallus MBLA0036
NCBI: GCA_009762275.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	78.10	no
125438	anaerobic	anaerobicⓘ	no	80.36	no
125438	aerobic	aerobicⓘ	yes	70.70	no
125438	spore-forming	spore-formingⓘ	no	85.42	no
125438	thermophilic	thermophileⓘ	no	82.54	yes
125438	flagellated	motile2+ⓘ	no	85.53	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloplanus rallus sp. nov., a halophilic archaeon isolated from crude solar salt.	Cho ES, Cha IT, Roh SW, Nam YD, Seo MJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002970	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66694	Eui-Sang Cho, In-Tae Cha, Seong Woon Roh, Young-Do Nam, Myung-Ji Seo: Haloplanus rallus sp. nov., a halophilic archaeon isolated from crude solar salt. IJSEM 68: 3226 - 3231 2018 ( DOI 10.1099/ijsem.0.002970 , PubMed 30129921 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Haloplanus salinarum (KCTC 4239, JCM 31425, MBLA0036)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_009762275

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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