Name: Flavobacterium psychroterrae P3922
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159751

Type strain:

Species: Flavobacterium psychroterrae

Strain Designation: P3922

Culture col. no.: LMG 30616, CCM 8827

NCBI tax ID(s): 2133767 (species)

Section

Flavobacterium psychroterrae P3922 is an aerobe, mesophilic, Gram-positive bacterium that has a yellow pigmentation and was isolated from stone fragment.

Gram-positive
motile
pigmented
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium psychroterrae**
	Full Scientific Name (PNU)	Flavobacterium psychroterrae Králová et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66678]	Gram stain	positive
[Ref.: #66678]	Cell length	1.6-4.5 µm
[Ref.: #66678]	Cell width	0.3-0.5 µm
[Ref.: #66678]	Cell shape	rod-shaped
[Ref.: #66678]	Motility	yes
[Ref.: #66678]	Flagellum arrangement	gliding

[Ref.: #66678]	Colony color	clear metallic sheen
[Ref.: #66678]	Cultivation medium used	Endo agar

[Ref.: #66678]	Pigment production	yes
[Ref.: #66678]	Pigmentation color	yellow
[Ref.: #66678]	Pigment name	flexirubin-type

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Endo agar

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

tryptic soy agar (TSA)

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

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Culture medium

Marine agar (MA)

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #66678]		no	growth	35 °C
[Ref.: #66678]			growth	1-25 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH	pH range
[Ref.: #66678]			growth	6-9	alkaliphile

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66678]	Oxygen tolerance	aerobe
[Ref.: #66678]	Oxygen tolerance	microaerophile

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66678]		NaCl		growth	1	%(w/v)
[Ref.: #66678]		NaCl	no	growth	2	%(w/v)

[Ref.: #66678]	Observation	Cells occur singly, occasionally in pairs or irregular clusters.
[Ref.: #66678]	Observation	Gliding motility present on R2A agar but no motility is observed by the hanging-drop technique.
[Ref.: #66678]	Observation	Filamentous structures up to 7.0 µm long can be formed.
[Ref.: #66678]	Observation	Presence of a capsule is negative.
[Ref.: #66678]	Observation	Glucose is not fermented to acid in OF test medium.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66678]	(R)-malic acid ChEBI	-	carbon source
[Ref.: #66678]	(S)-lactate ChEBI	-	carbon source
[Ref.: #66678]	(S)-malic acid ChEBI	-	carbon source
[Ref.: #66678]	1 % sodium lactate	-	carbon source
[Ref.: #66678]	2-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #66678]	2-oxobutanoate ChEBI	-	carbon source
[Ref.: #66678]	2-oxoglutarate ChEBI	-	carbon source
[Ref.: #66678]	3-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #66678]	3-O-methyl-D-glucose ChEBI	-	carbon source
[Ref.: #66678]	4-hydroxyphenylacetic acid ChEBI	-	carbon source
[Ref.: #66678]	acetamide ChEBI	-	assimilation
[Ref.: #66678]	acetic acid ChEBI	+	carbon source
[Ref.: #66678]	acetoacetate ChEBI	-	carbon source
[Ref.: #66678]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #66678]	aztreonam ChEBI	-	carbon source
[Ref.: #66678]	bromosuccinate ChEBI	-	carbon source
[Ref.: #66678]	casein	+	hydrolysis
[Ref.: #66678]	cellobiose ChEBI	+	carbon source
[Ref.: #66678]	cellulose ChEBI	-	degradation
[Ref.: #66678]	citric acid ChEBI	-	assimilation
[Ref.: #66678]	citric acid ChEBI	-	carbon source
[Ref.: #66678]	D-arabitol ChEBI	-	carbon source
[Ref.: #66678]	D-aspartate ChEBI	-	carbon source
[Ref.: #66678]	D-fructose ChEBI	+	carbon source
[Ref.: #66678]	D-fructose 6-phosphate ChEBI	-	carbon source
[Ref.: #66678]	D-fucose ChEBI	-	carbon source
[Ref.: #66678]	D-galactose ChEBI	+	carbon source
[Ref.: #66678]	D-galacturonic acid ChEBI	+	carbon source
[Ref.: #66678]	D-glucarate ChEBI	-	carbon source
[Ref.: #66678]	D-glucose 6-phosphate ChEBI	+	carbon source
[Ref.: #66678]	D-glucuronate ChEBI	-	carbon source
[Ref.: #66678]	D-mannitol ChEBI	-	carbon source
[Ref.: #66678]	D-mannose ChEBI	+	carbon source
[Ref.: #66678]	D-serine ChEBI	-	carbon source
[Ref.: #66678]	D-sorbitol ChEBI	-	carbon source
[Ref.: #66678]	D-trehalose ChEBI	+	carbon source
[Ref.: #66678]	dextrin ChEBI	+	carbon source
[Ref.: #66678]	dna ChEBI	+	hydrolysis
[Ref.: #66678]	esculin ChEBI	+	hydrolysis
[Ref.: #66678]	formate ChEBI	-	carbon source
[Ref.: #66678]	fructose ChEBI	+	builds acid from
[Ref.: #66678]	fusidate ChEBI	-	carbon source
[Ref.: #66678]	galactarate ChEBI	-	carbon source
[Ref.: #66678]	gamma-aminobutyric acid ChEBI	-	carbon source
[Ref.: #66678]	gelatin ChEBI	+	carbon source
[Ref.: #66678]	gelatin ChEBI	+	hydrolysis
[Ref.: #66678]	gentiobiose ChEBI	+	carbon source
[Ref.: #66678]	glucose ChEBI	+	builds acid from
[Ref.: #66678]	glucuronamide ChEBI	-	carbon source
[Ref.: #66678]	glycerol ChEBI	-	carbon source
[Ref.: #66678]	glycine-proline ChEBI	+	carbon source
[Ref.: #66678]	inosine ChEBI	-	carbon source
[Ref.: #66678]	L-alanine ChEBI	-	carbon source
[Ref.: #66678]	L-arginine ChEBI	-	carbon source
[Ref.: #66678]	L-aspartate ChEBI	+	carbon source
[Ref.: #66678]	L-fucose ChEBI	-	carbon source
[Ref.: #66678]	L-galactonic acid gamma-lactone ChEBI	+	carbon source
[Ref.: #66678]	L-glutamate ChEBI	+	carbon source
[Ref.: #66678]	L-histidine ChEBI	-	carbon source
[Ref.: #66678]	L-pyroglutamic acid ChEBI	-	carbon source
[Ref.: #66678]	L-rhamnose ChEBI	+	carbon source
[Ref.: #66678]	L-serine ChEBI	-	carbon source
[Ref.: #66678]	lactose ChEBI	-	carbon source
[Ref.: #66678]	lecithin ChEBI	-	hydrolysis
[Ref.: #66678]	lithium chloride ChEBI	-	carbon source
[Ref.: #66678]	malonate ChEBI	-	assimilation
[Ref.: #66678]	maltose ChEBI	+	builds acid from
[Ref.: #66678]	maltose ChEBI	+	carbon source
[Ref.: #66678]	melibiose ChEBI	-	carbon source
[Ref.: #66678]	methyl (R)-lactate ChEBI	-	carbon source
[Ref.: #66678]	methyl beta-D-glucopyranoside ChEBI	+	carbon source
[Ref.: #66678]	methyl pyruvate ChEBI	-	carbon source
[Ref.: #66678]	myo-inositol ChEBI	-	carbon source
[Ref.: #66678]	N-acetyl-D-mannosamine ChEBI	-	carbon source
[Ref.: #66678]	N-acetylgalactosamine ChEBI	+	carbon source
[Ref.: #66678]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #66678]	n-acetylneuraminate ChEBI	-	carbon source
[Ref.: #66678]	nalidixic acid ChEBI	-	carbon source
[Ref.: #66678]	nitrate ChEBI	+	reduction
[Ref.: #66678]	nitrite ChEBI	-	reduction
[Ref.: #66678]	pectin ChEBI	-	carbon source
[Ref.: #66678]	potassium tellurite ChEBI	-	carbon source
[Ref.: #66678]	propionate ChEBI	-	carbon source
[Ref.: #66678]	quinate ChEBI	-	carbon source
[Ref.: #66678]	raffinose ChEBI	-	carbon source
[Ref.: #66678]	salicin ChEBI	+	carbon source
[Ref.: #66678]	sodium bromate ChEBI	-	carbon source
[Ref.: #66678]	sodium butyrate ChEBI	-	carbon source
[Ref.: #66678]	stachyose ChEBI	-	carbon source
[Ref.: #66678]	starch ChEBI	+	hydrolysis
[Ref.: #66678]	sucrose ChEBI	-	carbon source
[Ref.: #66678]	turanose ChEBI	-	carbon source
[Ref.: #66678]	tween 40 ChEBI	+	carbon source
[Ref.: #66678]	tween 80 ChEBI	-	hydrolysis
[Ref.: #66678]	tyrosine ChEBI	-	hydrolysis
[Ref.: #66678]	xylose ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #66678]	ampicillin ChEBI				yes	10	µg (disc)
[Ref.: #66678]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #66678]	penicillin g ChEBI				yes	10	µg (disc)
[Ref.: #66678]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #66678]	vibriostat ChEBI	yes	150	µg (disc)

	Metabolite production	Metabolite
[Ref.: #66678]		indole ChEBI

	Enzyme	Enzyme activity	EC number
[Ref.: #66678]	acid phosphatase	+	3.1.3.2
[Ref.: #66678]	alkaline phosphatase	+	3.1.3.1
[Ref.: #66678]	alpha-fucosidase	-	3.2.1.51
[Ref.: #66678]	alpha-galactosidase	-	3.2.1.22
[Ref.: #66678]	alpha-galactosidase	+	3.2.1.22
[Ref.: #66678]	alpha-mannosidase	-	3.2.1.24
[Ref.: #66678]	arginine dihydrolase	-	3.5.3.6
[Ref.: #66678]	beta-galactosidase	+	3.2.1.23
[Ref.: #66678]	beta-glucosidase	+	3.2.1.21
[Ref.: #66678]	beta-glucuronidase	-	3.2.1.31
[Ref.: #66678]	catalase	+	1.11.1.6
[Ref.: #66678]	cystine arylamidase	-	3.4.11.3
[Ref.: #66678]	esterase (C 4)	+
[Ref.: #66678]	esterase Lipase (C 8)	+
[Ref.: #66678]	leucine arylamidase	+	3.4.11.1
[Ref.: #66678]	lysine decarboxylase	-	4.1.1.18
[Ref.: #66678]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #66678]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #66678]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #66678]	trypsin	-	3.4.21.4
[Ref.: #66678]	urease	-	3.5.1.5
[Ref.: #66678]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #66678]

Fatty acid	Percentage
C15:0 iso	20.2
C16:1 w7c/ C16:1 w6c	11.6
C17:0 iso 3OH	9.6
C15:0 anteiso	8.2
C15:0 iso 3OH	8.1
C15:1 iso G	7.7
C16:0 iso 3OH	5.3
C16:0 10-methyl/ C17:1 iso w9c	4.5
C17:1 w6c	4
C15:1 w6c	3.6
C15:0 3OH	2.5
C17:0 2OH	2.4
C16:0 iso	2
C16:0 3OH	2
C16:0	1.6
C15:0 2OH	1.1
C16:1 iso H	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66678]	Sample type/isolated from	stone fragment
[Ref.: #66678]	Geographic location (country and/or sea, region)	fissure in Kom arek Wall, James Ross Island
[Ref.: #66678]	Country	Antarctica
[Ref.: #66678]	Country ISO 3 Code	ATA
[Ref.: #66678]	Continent	Australia and Oceania
[Ref.: #66678]	Geographic location	-63.8305°/-57.8388°
[Ref.: #66678]	Enrichment culture	R2A agar
[Ref.: #66678]	Enrichment culture duration	5-7 days
[Ref.: #66678]	Enrichment culture temperature	15 ̊C
[Ref.: #66678]	Isolation/enrichment procedure	1 g stone fragments or soil samples in 5 ml sterile saline solution, subsequently 100 µl of this suspension was spread by L-loop on the surface of Reasoner's 2A agar plates and cultivated at 15°C for up to 5-7 days. Analogously, water samples were spread on R2A agar plates (150 µl) and cultivated at 15°C for up to 5 days.
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Geologic

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66678]	Flavobacterium sp. P3922 16S ribosomal RNA gene, partial sequence	MH100901	1357	ENA	2133767 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium psychroterrae CCM 8827	GCA_018380615	scaffold	GenBank	2133767 tax ID	*
[Ref.: #66792]	Flavobacterium psychroterrae strain CCM 8827	2133767.3	wgs	PATRIC	2133767 tax ID	*
[Ref.: #66792]	Rhizobium sp. VS19-DR129.2 VS19-DR129.2	GCA_020075805	scaffold	PATRIC	2875956 tax ID	*

Availability in culture collections External links

[Ref.: #66678]

Culture collection no.

LMG 30616, CCM 8827

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium chryseum sp. nov. and Flavobacterium psychroterrae sp. nov., novel environmental bacteria isolated from Antarctica.	Kralova S, Svec P, Busse HJ, Stankova E, Vaczi P, Sedlacek I	Int J Syst Evol Microbiol	10.1099/ijsem.0.002952	2018	*
Phylogeny	Flavobacterium ranwuense sp. nov., isolated from glacier.	Zhang GQ, Liu Q, Liu HC, Zhou YG, Xin YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003687	2019	*
Phylogeny	Flavobacterium psychrotolerans sp. nov., a psychrotolerant bacterium isolated from Renlongba glacier on the Tibetan Plateau.	Yang LL, Liu Q, Liu HC, Zhou YG, Xin YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003868	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66678

Stanislava Kralova, Pavel Svec, Hans-Jürgen Busse, Eva Stankova, Peter Vaczi, Ivo Sedlacek: Flavobacterium chryseum sp. nov. and Flavobacterium psychroterrae sp. nov., novel environmental bacteria isolated from Antarctica. IJSEM 68: 3132 - 3139 2018 ( DOI 10.1099/ijsem.0.002952 , PubMed 30095387 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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